Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1957921..1958192 | Replicon | chromosome |
| Accession | NZ_CP046716 | ||
| Organism | Escherichia coli strain T16R | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1958051..1958154 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1957921..1958192 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPL39_RS09325 | 1954476..1955138 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| GPL39_RS09330 | 1955162..1955818 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| GPL39_RS09335 | 1955920..1956150 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GPL39_RS09340 | 1956289..1956663 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| GPL39_RS09345 | 1956667..1957539 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| GPL39_RS09350 | 1957552..1957893 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1957921..1958192 | - | 272 | - | - | Antitoxin |
| - | 1958051..1958154 | + | 104 | - | - | Toxin |
| GPL39_RS09355 | 1958289..1958945 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| GPL39_RS09360 | 1958946..1959137 | - | 192 | WP_001296140.1 | YebW family protein | - |
| GPL39_RS09365 | 1959242..1959478 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GPL39_RS09370 | 1959596..1961035 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T144728 NZ_CP046716:1958051-1958154 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT144728 NZ_CP046716:c1958192-1957921 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
