Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2048649..2048815 | Replicon | chromosome |
| Accession | NZ_CP046672 | ||
| Organism | Raoultella ornithinolytica strain 172117885 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2048707..2048810 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2048649..2048815 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPJ66_RS09505 | 2043786..2045846 | + | 2061 | WP_086816201.1 | oligopeptidase B | - |
| GPJ66_RS09510 | 2045852..2046511 | - | 660 | WP_004863981.1 | exodeoxyribonuclease X | - |
| GPJ66_RS09515 | 2046590..2046820 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| GPJ66_RS09520 | 2046947..2047321 | + | 375 | WP_004863975.1 | CopC domain-containing protein YobA | - |
| GPJ66_RS09525 | 2047325..2048194 | + | 870 | WP_004863974.1 | copper homeostasis membrane protein CopD | - |
| GPJ66_RS09530 | 2048211..2048549 | + | 339 | WP_015584012.1 | YebY family protein | - |
| - | 2048649..2048815 | - | 167 | - | - | Antitoxin |
| - | 2048707..2048810 | + | 104 | - | - | Toxin |
| GPJ66_RS09535 | 2049120..2049263 | - | 144 | WP_054828791.1 | Ecr family regulatory small membrane protein | - |
| GPJ66_RS09540 | 2049384..2050355 | - | 972 | WP_172412537.1 | VirK/YbjX family protein | - |
| GPJ66_RS09545 | 2050498..2051142 | + | 645 | WP_004863967.1 | protein-serine/threonine phosphatase | - |
| GPJ66_RS09550 | 2051148..2051339 | - | 192 | WP_004863962.1 | YebW family protein | - |
| GPJ66_RS09555 | 2051433..2051672 | - | 240 | WP_004863958.1 | YebV family protein | - |
| GPJ66_RS09560 | 2051787..2053220 | - | 1434 | WP_180862560.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T144685 NZ_CP046672:2048707-2048810 [Raoultella ornithinolytica]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT144685 NZ_CP046672:c2048815-2048649 [Raoultella ornithinolytica]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
