Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1975392..1975537 | Replicon | chromosome |
| Accession | NZ_CP046645 | ||
| Organism | Klebsiella pneumoniae strain EGKP3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1975428..1975530 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1975392..1975537 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPU01_RS09530 (GPU01_09435) | 1970522..1972582 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| GPU01_RS09535 (GPU01_09440) | 1972586..1973245 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| GPU01_RS09540 (GPU01_09445) | 1973324..1973554 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| GPU01_RS09545 (GPU01_09450) | 1973667..1974041 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| GPU01_RS09550 (GPU01_09455) | 1974045..1974914 | + | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| GPU01_RS09555 (GPU01_09460) | 1974931..1975269 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1975392..1975537 | - | 146 | - | - | Antitoxin |
| - | 1975428..1975530 | + | 103 | - | - | Toxin |
| GPU01_RS09560 (GPU01_09465) | 1975905..1976048 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| GPU01_RS09565 (GPU01_09470) | 1976153..1977121 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| GPU01_RS09570 (GPU01_09475) | 1977278..1977931 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| GPU01_RS09575 (GPU01_09480) | 1977928..1978119 | - | 192 | WP_002911395.1 | YebW family protein | - |
| GPU01_RS09580 (GPU01_09485) | 1978217..1978456 | - | 240 | WP_002911393.1 | YebV family protein | - |
| GPU01_RS09585 (GPU01_09490) | 1978572..1980005 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T144639 NZ_CP046645:1975428-1975530 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT144639 NZ_CP046645:c1975537-1975392 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
