Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2887749..2887893 | Replicon | chromosome |
| Accession | NZ_CP046618 | ||
| Organism | Enterobacter asburiae strain AEB30 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2887755..2887858 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2887749..2887893 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EAAEB30_RS13765 | 2883153..2883464 | - | 312 | WP_157189367.1 | hypothetical protein | - |
| EAAEB30_RS13770 | 2883898..2884155 | - | 258 | WP_148770109.1 | hypothetical protein | - |
| EAAEB30_RS13775 | 2884403..2884822 | - | 420 | WP_090419781.1 | Exc2 family lipoprotein | - |
| EAAEB30_RS13780 | 2885010..2886122 | + | 1113 | WP_157189368.1 | colicin-N | - |
| EAAEB30_RS13785 | 2886160..2886708 | - | 549 | WP_157189369.1 | colicin immunity protein Cui | - |
| - | 2887749..2887893 | + | 145 | - | - | Antitoxin |
| - | 2887755..2887858 | - | 104 | - | - | Toxin |
| EAAEB30_RS13795 | 2887997..2888335 | - | 339 | WP_024909705.1 | YebY family protein | - |
| EAAEB30_RS13800 | 2888352..2889221 | - | 870 | WP_157189370.1 | copper homeostasis membrane protein CopD | - |
| EAAEB30_RS13805 | 2889223..2889594 | - | 372 | WP_157189371.1 | CopC domain-containing protein YobA | - |
| EAAEB30_RS13810 | 2889732..2889962 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| EAAEB30_RS13815 | 2890073..2890723 | + | 651 | WP_157189372.1 | carbon-nitrogen hydrolase family protein | - |
| EAAEB30_RS13820 | 2890748..2891410 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T144616 NZ_CP046618:c2887858-2887755 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT144616 NZ_CP046618:2887749-2887893 [Enterobacter asburiae]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
