Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) slvAT/RES(toxin)
Location 3662577..3663499 Replicon chromosome
Accession NZ_CP046603
Organism Lysobacter soli strain XL170

Toxin (Protein)


Gene name slvT Uniprot ID -
Locus tag GOY17_RS16680 Protein ID WP_157031217.1
Coordinates 3662954..3663499 (+) Length 182 a.a.

Antitoxin (Protein)


Gene name slvA Uniprot ID -
Locus tag GOY17_RS16675 Protein ID WP_157031216.1
Coordinates 3662577..3662957 (+) Length 127 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GOY17_RS16650 3657595..3657957 - 363 WP_115842069.1 BON domain-containing protein -
GOY17_RS16655 3658093..3659025 - 933 WP_157031212.1 S41 family peptidase -
GOY17_RS16660 3659119..3659472 + 354 WP_157031213.1 6-carboxytetrahydropterin synthase QueD -
GOY17_RS16665 3659497..3661776 - 2280 WP_157031214.1 patatin-like phospholipase family protein -
GOY17_RS16670 3661966..3662382 + 417 WP_157031215.1 phasin family protein -
GOY17_RS16675 3662577..3662957 + 381 WP_157031216.1 DUF2384 domain-containing protein Antitoxin
GOY17_RS16680 3662954..3663499 + 546 WP_157031217.1 RES family NAD+ phosphorylase Toxin
GOY17_RS16685 3663578..3666745 - 3168 WP_157031218.1 multidrug efflux RND transporter permease subunit -
GOY17_RS16690 3666755..3667981 - 1227 WP_157031219.1 efflux RND transporter periplasmic adaptor subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

RES domain

(12-167)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 182 a.a.        Molecular weight: 19816.36 Da        Isoelectric Point: 5.5851

>T144572 WP_157031217.1 NZ_CP046603:3662954-3663499 [Lysobacter soli]
MILRQLGDGDALYRVIVPRWSHAPTSGAGAARKGGRFNRPGLEALYLSKDAITALEEYRQHELLLPPGTLVTFLVGPLVV
VDFSAGFDSVRWEPIWADYACNWRRLAFDERSEPPSWVLGDIALDAGAAGILFPSSAHAGGTNLVLFNSSQLPARMLRVH
DPDGHLPGDARSWRDADDARD

Download         Length: 546 bp

>T144572 NZ_CP062160:c2712839-2712561 [Escherichia coli]
ATGTTACCCGTGTTATGGCTTGAAAGCGCAGATACCGACCTAGATGATATAACTAGTTATATTGCTCGTTTCGACATAGA
TGCGGCTGAACGCTTATGGCAGCGATTAAGGGGTTGTGTGCTGCCGTTATCCGAACATCCGTATTTATACCCACCAAGCG
ACAGAGTACCTGGCTTGCGTGAGATTGTAGCCCACCCTAACTATATAATTCTATACCGCGTAACAACATCAAGCGTTGAA
GTAGTAAACGTGATCCACGCAAGACGCCAGTTTCCCTAA

Antitoxin


Download         Length: 127 a.a.        Molecular weight: 13730.48 Da        Isoelectric Point: 5.1634

>AT144572 WP_157031216.1 NZ_CP046603:3662577-3662957 [Lysobacter soli]
MNAVMKSRASLAEAVREPDQVYLSPRRIGDALGLQVQSLAERARVSRNTPTARPQNEHLQQYLREVVRVIAAAEDAAGGD
RTRAIFWFMNDPLADFDYLTADALVQAGKAQVVIDYIESVAGGATG

Download         Length: 381 bp

>AT144572 NZ_CP062160:c2713032-2712841 [Escherichia coli]
ATGAATAGAGCCCTTTCACCAATGGTTTCTGAATTTGAAACCATTGAACAAGAAAACAGTTACAACGAATGGCTGCGTGC
GAAAGTAGCAACGAGCCTTGCAGATCCGCGCCCAGCAATTCCCCATGACGAAGTTGAGCGCAGAATGGCAGAACGCTTTG
CTAAGATGCGCAAGGAACGGAGCAAGCAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References