Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2746396..2746485 | Replicon | chromosome |
| Accession | NZ_CP046582 | ||
| Organism | Erwinia sp. E602 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2746398..2746485 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2746396..2746485 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GKQ23_RS14040 (GKQ23_13970) | 2741645..2741938 | - | 294 | WP_056241958.1 | hypothetical protein | - |
| GKQ23_RS14045 (GKQ23_13975) | 2742161..2743276 | + | 1116 | WP_056242475.1 | AI-2E family transporter | - |
| GKQ23_RS14050 (GKQ23_13980) | 2743582..2743737 | + | 156 | WP_212408581.1 | Hok/Gef family protein | - |
| GKQ23_RS14055 (GKQ23_13985) | 2743865..2744113 | - | 249 | WP_072166476.1 | hypothetical protein | - |
| GKQ23_RS14060 (GKQ23_13990) | 2744245..2745507 | - | 1263 | WP_212408582.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| GKQ23_RS14065 (GKQ23_13995) | 2745507..2745926 | - | 420 | WP_212408583.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| GKQ23_RS14070 (GKQ23_14000) | 2746157..2746399 | + | 243 | WP_072166475.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| - | 2746396..2746485 | + | 90 | - | - | Antitoxin |
| - | 2746398..2746485 | - | 88 | - | - | Toxin |
| GKQ23_RS14075 (GKQ23_14005) | 2746798..2747133 | - | 336 | WP_101505720.1 | YebY family protein | - |
| GKQ23_RS14080 (GKQ23_14010) | 2747200..2748078 | - | 879 | WP_212408584.1 | copper homeostasis membrane protein CopD | - |
| GKQ23_RS14085 (GKQ23_14015) | 2748080..2748442 | - | 363 | WP_212408585.1 | CopC domain-containing protein YobA | - |
| GKQ23_RS14090 (GKQ23_14020) | 2748609..2748839 | + | 231 | WP_212408586.1 | DNA polymerase III subunit theta | - |
| GKQ23_RS14095 (GKQ23_14025) | 2748958..2749716 | + | 759 | WP_212408587.1 | carbon-nitrogen hydrolase family protein | - |
| GKQ23_RS14100 (GKQ23_14030) | 2749729..2750394 | + | 666 | WP_101505716.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2734480..2752451 | 17971 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 88 bp
>T144532 NZ_CP046582:c2746485-2746398 [Erwinia sp. E602]
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTGCAAAGAGCCATTTCCCTGGACCAAAGGCAGGATTGGCCTTTGGT
CTTTTTTT
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTGCAAAGAGCCATTTCCCTGGACCAAAGGCAGGATTGGCCTTTGGT
CTTTTTTT
Antitoxin
Download Length: 90 bp
>AT144532 NZ_CP046582:2746396-2746485 [Erwinia sp. E602]
ATAAAAAAAGACCAAAGGCCAATCCTGCCTTTGGTCCAGGGAAATGGCTCTTTGCAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGC
ATAAAAAAAGACCAAAGGCCAATCCTGCCTTTGGTCCAGGGAAATGGCTCTTTGCAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGC
