Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-RelB
Location 734810..735389 Replicon chromosome
Accession NZ_CP046582
Organism Erwinia sp. E602

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag GKQ23_RS04760 Protein ID WP_212409902.1
Coordinates 735081..735389 (+) Length 103 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag GKQ23_RS04755 Protein ID WP_249168475.1
Coordinates 734810..735088 (+) Length 93 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GKQ23_RS04735 (GKQ23_04720) 730960..731865 + 906 WP_212409897.1 Fe(3+) dicitrate ABC transporter substrate-binding protein -
GKQ23_RS04740 (GKQ23_04725) 731877..732854 + 978 WP_249168474.1 iron-dicitrate ABC transporter permease FecC -
GKQ23_RS04745 (GKQ23_04730) 732928..733890 + 963 WP_212409899.1 Fe(3+) dicitrate ABC transporter permease subunit FecD -
GKQ23_RS04750 (GKQ23_04735) 733890..734660 + 771 WP_212409900.1 Fe(3+) dicitrate ABC transporter ATP-binding protein FecE -
GKQ23_RS04755 (GKQ23_04740) 734810..735088 + 279 WP_249168475.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
GKQ23_RS04760 (GKQ23_04745) 735081..735389 + 309 WP_212409902.1 type II toxin-antitoxin system YafQ family toxin Toxin
GKQ23_RS04765 (GKQ23_04750) 735418..736704 - 1287 WP_101505382.1 carbohydrate porin -
GKQ23_RS04770 (GKQ23_04755) 736694..738115 - 1422 WP_056231612.1 PTS transporter subunit EIIC -
GKQ23_RS04775 (GKQ23_04760) 738511..739923 - 1413 WP_212409903.1 glycoside hydrolase family 1 protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(11-101)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(3-77)


Sequences

Toxin        


Download         Length: 103 a.a.        Molecular weight: 11892.57 Da        Isoelectric Point: 9.9653

>T144525 WP_212409902.1 NZ_CP046582:735081-735389 [Erwinia sp. E602]
VNKRTRLLPAVENTKQFQKDWDSCRRAGRYDMNKVAVAMTLVYSGNPIPADYLDHPLKGKDYQKGERELHVGGDHLLIYR
FNAERTLLTWIRFGTHSELFGR

Download         Length: 309 bp

>T144525 NZ_CP062122:c3817674-3817264 [Pseudomonas sp. ADPe]
GTGAAATACCTGCTCGACACCAATATCCTCATCTACCTGCTGAAGAACCGCCCGGAATCCGTGGCCCGACGGGTCAATGC
CCTGCCCGCCGACGCCGGCCTGTGCATGTCCTTCTTCACCTATGCCGAACTGCTCAAGGGCGCCGAACGCAGCACCCGGC
GCAGCGAGGTCCTGCGCCAGCTGGAGCGCCTGACGCGCCAGGTGACGGTGGTCTACGACGGCACTCCGCGCCTGTGCGAG
CACTACGCGACGCAGTTCACCCGCCTCAAGCTGGCCGGCACGCCGATCGGCGCCAACGACCTGTGGATCGCCTGCCACGC
CCTGGCGCTGGAGGCGACCCTGGTGACGCACAACACCCGCGAGTTCGAACGCATCGACGGGCTACGCCTGGAAGACTGGG
CGGTCGAGTAG

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 10253.62 Da        Isoelectric Point: 4.4805

>AT144525 WP_249168475.1 NZ_CP046582:734810-735088 [Erwinia sp. E602]
MQAIVRARIDNALKSDATQVLSDCGLTLSTAIRLFLEQVVIKEGLPFEVNRTPNATTLAAMAEADEMEARHRQNEADGYS
TINEMMDKLNRE

Download         Length: 279 bp

>AT144525 NZ_CP062122:c3817898-3817671 [Pseudomonas sp. ADPe]
ATGAACGGCAACAGCCAGGCGGTGCGCATTCCCCAGGAGTTCCGCCTGGACGCCAGCCGCGTGGAAATCCGCCGCCAGGC
CAATGGCGACCTGGTCATCCACCCATTGCCCGAGGACCGCGGCGAGGCGTTGCTGCAGGCGCTGTCCGGCTTCGACGACG
AGTTCATCGAAGCACTGGAAGAAGGGCAGCGCGAACAGCCGCCGATGCAGGAGCGGGAAGAGCTGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References