Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2874676..2874846 | Replicon | chromosome |
| Accession | NZ_CP046557 | ||
| Organism | Leclercia sp. 1106151 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2874678..2874780 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2874676..2874846 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GNG29_RS13670 | 2871817..2872932 | + | 1116 | WP_156654749.1 | recombinase RecT | - |
| GNG29_RS13675 | 2872970..2873209 | + | 240 | WP_156654750.1 | DUF4060 family protein | - |
| GNG29_RS13680 | 2873274..2873546 | + | 273 | WP_032611896.1 | excisionase | - |
| GNG29_RS13685 | 2873515..2874600 | + | 1086 | WP_156654751.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2874676..2874846 | + | 171 | - | - | Antitoxin |
| - | 2874678..2874780 | - | 103 | - | - | Toxin |
| GNG29_RS13690 | 2874921..2875259 | - | 339 | WP_103180045.1 | YebY family protein | - |
| GNG29_RS13695 | 2875274..2876146 | - | 873 | WP_156654752.1 | copper homeostasis membrane protein CopD | - |
| GNG29_RS13700 | 2876148..2876513 | - | 366 | WP_103180047.1 | CopC domain-containing protein YobA | - |
| GNG29_RS13705 | 2876650..2876880 | + | 231 | WP_103180048.1 | DNA polymerase III subunit theta | - |
| GNG29_RS13710 | 2876988..2877644 | + | 657 | WP_103181103.1 | carbon-nitrogen hydrolase family protein | - |
| GNG29_RS13715 | 2877669..2878331 | + | 663 | WP_103180049.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2804100..2942538 | 138438 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T144501 NZ_CP046557:c2874780-2874678 [Leclercia sp. 1106151]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 171 bp
>AT144501 NZ_CP046557:2874676-2874846 [Leclercia sp. 1106151]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCAGCAAAAGTGGCCTG
AAAAAAAGCGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCAGCAAAAGTGGCCTG
AAAAAAAGCGT
