Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 517665..517936 | Replicon | chromosome |
| Accession | NZ_CP046539 | ||
| Organism | Escherichia coli strain FHI_NMBU_10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 517795..517898 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 517665..517936 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GOE21_RS02590 | 514220..514882 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| GOE21_RS02595 | 514906..515562 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| GOE21_RS02600 | 515664..515894 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GOE21_RS02605 | 516033..516407 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| GOE21_RS02610 | 516411..517283 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| GOE21_RS02615 | 517296..517637 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 517665..517936 | - | 272 | - | - | Antitoxin |
| - | 517795..517898 | + | 104 | - | - | Toxin |
| GOE21_RS02620 | 518033..518689 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| GOE21_RS02625 | 518690..518881 | - | 192 | WP_001296140.1 | YebW family protein | - |
| GOE21_RS02630 | 518986..519222 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GOE21_RS02635 | 519340..520779 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T144471 NZ_CP046539:517795-517898 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT144471 NZ_CP046539:c517936-517665 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
