144435

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC(toxin)
Location 2229882..2230570 Replicon chromosome
Accession NZ_CP046529
Organism Mycobacterium tuberculosis strain SIT745/EAI1-MYS

Toxin (Protein)


Gene name vapC Uniprot ID P0A653
Locus tag AYJ03_RS10415 Protein ID WP_003409958.1
Coordinates 2229882..2230301 (-) Length 140 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ28
Locus tag AYJ03_RS10420 Protein ID WP_003409968.1
Coordinates 2230310..2230570 (-) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AYJ03_RS10395 2225377..2226225 + 849 WP_003409942.1 class I SAM-dependent methyltransferase -
AYJ03_RS10400 2226188..2227633 - 1446 WP_003899115.1 APC family permease -
AYJ03_RS10405 2227812..2228498 - 687 WP_003409954.1 immunoprotective protein Mpt64 -
AYJ03_RS10410 2228689..2229657 - 969 WP_003899116.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
AYJ03_RS10415 2229882..2230301 - 420 WP_003409958.1 type II toxin-antitoxin system VapC family toxin Toxin
AYJ03_RS10420 2230310..2230570 - 261 WP_003409968.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
AYJ03_RS10425 2230713..2232389 + 1677 WP_003899118.1 PecA family PE domain-processing aspartic protease -
AYJ03_RS10430 2232377..2233030 - 654 WP_003409976.1 cutinase Cfp21 -
AYJ03_RS10435 2233145..2233375 + 231 WP_003409980.1 DUF167 domain-containing protein -
AYJ03_RS10440 2233460..2234371 - 912 WP_003409986.1 ArgP/LysG family DNA-binding transcriptional regulator -
AYJ03_RS10445 2234480..2235079 + 600 WP_003409989.1 L-lysine exporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(1-125)

Antitoxin

Antitoxin VapB-like

(2-81)


Sequences

Toxin        


Download         Length: 140 a.a.        Molecular weight: 14724.89 Da        Isoelectric Point: 7.9535

>T144435 WP_003409958.1 NZ_CP046529:c2230301-2229882 [Mycobacterium tuberculosis]
MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFERLRSEIGLSVSSFTAEHAAAT
QRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGNDFPQTDLEFRGVVGYWPGVA

Download         Length: 420 bp

>T144435 NZ_CP061960:90138-90296 [Klebsiella pneumoniae]
ATGAAACTACCACGAAGTTCCCTTGTCTGGTGTGTGTTGATCGTGTGTCTCACACTGTTGATATTCACTTATCTGACACG
AAAATCGCTGTGCGAGATTCGTTACAGAGACGGACACAGGGAGGTGGCGGCTTTCATGGCTTACGAATCCGGTAAGTAG

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9528.88 Da        Isoelectric Point: 5.1007

>AT144435 WP_003409968.1 NZ_CP046529:c2230570-2230310 [Mycobacterium tuberculosis]
VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDREAQLLDILRTEIWPLLADRSPITKLEREQILGY
DPATGV

Download         Length: 261 bp

>AT144435 NZ_CP061960:90027-90092 [Klebsiella pneumoniae]
AGAAGATAGCCCCGTAGTAAGTTAATTTTCATTAACCACCACGAGGCATCCCTATGTCTAGTCCAC

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829C4H9

Antitoxin

Source ID Structure
AlphaFold DB A0A829C483

References