Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC(toxin)
Location 716739..717388 Replicon chromosome
Accession NZ_CP046529
Organism Mycobacterium tuberculosis strain SIT745/EAI1-MYS

Toxin (Protein)


Gene name vapC Uniprot ID P67241
Locus tag AYJ03_RS03280 Protein ID WP_003403236.1
Coordinates 716993..717388 (+) Length 132 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ34
Locus tag AYJ03_RS03275 Protein ID WP_003403235.1
Coordinates 716739..716993 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AYJ03_RS20875 711865..712560 + 696 WP_003900189.1 galactose-1-phosphate uridylyltransferase -
AYJ03_RS20735 712557..713048 + 492 WP_012054156.1 galactose-1-phosphate uridylyltransferase -
AYJ03_RS03260 713045..714136 + 1092 WP_003906403.1 galactokinase -
AYJ03_RS03265 714531..715595 + 1065 WP_003898532.1 hypothetical protein -
AYJ03_RS03270 715699..716646 + 948 WP_003403232.1 DUF732 domain-containing protein -
AYJ03_RS03275 716739..716993 + 255 WP_003403235.1 type II toxin-antitoxin system antitoxin VapB30 Antitoxin
AYJ03_RS03280 716993..717388 + 396 WP_003403236.1 type II toxin-antitoxin system toxin ribonuclease C30 Toxin
AYJ03_RS03285 717482..718222 - 741 WP_003403239.1 TVP38/TMEM64 family protein -
AYJ03_RS03290 718354..718614 + 261 WP_003403244.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
AYJ03_RS03295 718611..719018 + 408 WP_003403246.1 type II toxin-antitoxin system VapC family toxin -
AYJ03_RS03300 719090..720241 - 1152 WP_003403248.1 FIST C-terminal domain-containing protein -
AYJ03_RS03305 720334..722061 - 1728 WP_003900979.1 exodeoxyribonuclease V subunit alpha -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(1-124)

Antitoxin

Antitoxin VapB-like

(1-83)


Sequences

Toxin        


Download         Length: 132 a.a.        Molecular weight: 14250.04 Da        Isoelectric Point: 4.7475

>T144412 WP_003403236.1 NZ_CP046529:716993-717388 [Mycobacterium tuberculosis]
MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLWLHRAAVDLVAVHADQADAAR
AAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDFQHTDIATVALP

Download         Length: 396 bp

>T144412 NZ_CP061952:913135-913524 [Klebsiella pneumoniae]
ATGCAAACCAAATCATCCCCCCTCATGCGGGCGGCATCGTCACGTCCGTCTCCCGTGTATATCTGGCAGACCCTGCTGAC
CAGCCTGCTGGCACAACACTATGGACTCACGCTTAGCGATACGCCGTTCAGTGATGAACAGGTCATTCAGCAACATATTG
ATGCCGGTATCTCGCTGGTTGATGCCCTGAATTTTATCGTTGAGAAGTATGAACTGGTCCGCACTGACCGCCCAGGCTTC
AGCATCCTGACGCAGTCTCCGTTTATCACACCCATAGATATCCTCCGGGCCAGGAAAGCAACGGGGCTGATGAACCGTGA
CACGTATAAAGAGGTGACGGCGATTACCAGAGGGCAACATCCGCAGGTCAGCGCTCCAGGCAAGCGATGA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9139.52 Da        Isoelectric Point: 9.2702

>AT144412 WP_003403235.1 NZ_CP046529:716739-716993 [Mycobacterium tuberculosis]
MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRCAALPVVDNRSAEAILGYDER
GLPA

Download         Length: 255 bp

>AT144412 NZ_CP061952:912752-913078 [Klebsiella pneumoniae]
ATCAGCGAACCCTGGTGGGGACTCAGACGCAGTACCTCCCCGTGTTTTGGTGCCCGTCTGGTCCAGGAGGGGAACCGCCT
GCATTACCTGGCTGACCGCGCGAACTTTGATGGTCAGTTCTGTGATGCGGATTTGCGCCATCTTGACCAGTCTTTCCCGG
TATTAATGAAACAGCTGGAGTTAATGCTCACCAGCGGTGAACTGAACCCCCGTCATCAGCATGGCATCATACTGTATGCA
AAAGGTCTGACCTGCGAGGCGGATACGCTCGGTTCGCATGGCTATGTTTATATCGCGATTTATCCCACTCCCGTCGCCAC
GGCATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4XGR
PDB 4XGQ

Antitoxin

Source ID Structure
PDB 4XGR
PDB 4XGQ
AlphaFold DB A0A7U4BSC2

References