144408

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1-PHD
Location 695168..695814 Replicon chromosome
Accession NZ_CP046529
Organism Mycobacterium tuberculosis strain SIT745/EAI1-MYS

Toxin (Protein)


Gene name vapC Uniprot ID O07783
Locus tag AYJ03_RS03120 Protein ID WP_003403122.1
Coordinates 695168..695560 (-) Length 131 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TQ86
Locus tag AYJ03_RS03125 Protein ID WP_003403125.1
Coordinates 695557..695814 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AYJ03_RS03105 690830..692356 + 1527 WP_003403112.1 virulence factor Mce family protein -
AYJ03_RS03110 692419..693561 + 1143 WP_003911253.1 virulence factor Mce family protein -
AYJ03_RS03115 693566..695116 + 1551 WP_003403119.1 MCE family protein -
AYJ03_RS03120 695168..695560 - 393 WP_003403122.1 type II toxin-antitoxin system toxin ribonuclease C4 Toxin
AYJ03_RS03125 695557..695814 - 258 WP_003403125.1 type II toxin-antitoxin system antitoxin VapB4 Antitoxin
AYJ03_RS03130 695997..697232 - 1236 WP_003403128.1 ATP-binding protein -
AYJ03_RS03135 697483..697896 - 414 WP_003403137.1 type II toxin-antitoxin system VapC family toxin -
AYJ03_RS03140 697893..698129 - 237 WP_003403139.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
AYJ03_RS03145 698233..698739 - 507 WP_003900973.1 two component system sensor kinase HK1 -
AYJ03_RS03150 698853..699383 - 531 WP_003917320.1 two component system sensor kinase HK2 -
AYJ03_RS03155 699367..700062 - 696 WP_003918099.1 two-component system response regulator TcrA -
AYJ03_RS03160 700185..700496 + 312 WP_003403164.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(8-122)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(3-53)


Sequences

Toxin        


Download         Length: 131 a.a.        Molecular weight: 14080.08 Da        Isoelectric Point: 4.6558

>T144408 WP_003403122.1 NZ_CP046529:c695560-695168 [Mycobacterium tuberculosis]
VNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAW
ALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAMPDVEVITI

Download         Length: 393 bp

>T144408 NZ_CP061952:326918-327286 [Klebsiella pneumoniae]
ATGACGCTGCAGATTATCTCAGCGGAAGAGATAATACAGTTTCACGACAGGCTGCTCCGCGTCACGCCTGGCGTTGCCGG
TATGCCCGATCCAGGGCGTGCCGAAGCGATAATGTATAGGGTGCTAAACAAAATTGAATATGAAGGTGTGACAGACGTGT
GGCGACTCGCTGCGATGCATCTGCTGGCGATTTCTCGCGGTCATATATTTAATGATGGTAATAAGCGTACGGCACTGTTT
ATCACTCTGCTTTTTTTAAAGCGAAATGGAATTATATTGCCGGCGAATCCAGACTTCGTCGGCATGACCGTCGAGGCGGC
AGCAGGGCAACTTACCCTGGAACAGATTGTCGCGCGCTTGCGCGGATGA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9681.06 Da        Isoelectric Point: 7.0175

>AT144408 WP_003403125.1 NZ_CP046529:c695814-695557 [Mycobacterium tuberculosis]
MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVIGELVRLGPDTTNLGEELRETLTQTT
DDVRW

Download         Length: 258 bp

>AT144408 NZ_CP061952:326700-326921 [Klebsiella pneumoniae]
ATGAGAACGGTTAACTATAGCGAAGCCCGGCAAAATCTGGCCGATGTGCTGGAAAGCGCAGTGACAGGTGTACCTGTGAC
CATTACCCGTCGTGGGCATAAATCTGCAGTCATCATTAGTGCAGAAGAGTTTGAACGCTACCAGACGGCCAGAATGGATG
ATGAGTTCGCGGCTATCATGGCGGTTCATGGTGATGAGATCAGGGAGCTTGCGGATAAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4F8V4

Antitoxin

Source ID Structure
AlphaFold DB G0TQ86

References