Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | rlegTA/AbiEii-AbiEi |
| Location | 1817054..1818573 | Replicon | chromosome |
| Accession | NZ_CP046495 | ||
| Organism | Xanthomonas oryzae pv. oryzae strain IXO597 | ||
Toxin (Protein)
| Gene name | rlegT | Uniprot ID | A0A0K0GMB6 |
| Locus tag | IXO597_RS08720 | Protein ID | WP_011259680.1 |
| Coordinates | 1817650..1818573 (+) | Length | 308 a.a. |
Antitoxin (Protein)
| Gene name | rlegA | Uniprot ID | A0A854CLN1 |
| Locus tag | IXO597_RS08715 | Protein ID | WP_011409027.1 |
| Coordinates | 1817054..1817653 (+) | Length | 200 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IXO597_RS08680 (IXO597_008760) | 1812736..1813272 | - | 537 | WP_011409032.1 | lipocalin family protein | - |
| IXO597_RS08690 | 1813542..1814009 | - | 468 | WP_181718264.1 | hypothetical protein | - |
| IXO597_RS08695 | 1813990..1814280 | - | 291 | WP_011409031.1 | hypothetical protein | - |
| IXO597_RS08700 (IXO597_008780) | 1814779..1815810 | + | 1032 | WP_151420464.1 | IS630 family transposase | - |
| IXO597_RS08705 (IXO597_008785) | 1815792..1816367 | - | 576 | WP_080493559.1 | BrxE family protein | - |
| IXO597_RS08710 (IXO597_008790) | 1816399..1816689 | - | 291 | WP_228329665.1 | FaeA/PapI family transcriptional regulator | - |
| IXO597_RS08715 (IXO597_008800) | 1817054..1817653 | + | 600 | WP_011409027.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | Antitoxin |
| IXO597_RS08720 (IXO597_008805) | 1817650..1818573 | + | 924 | WP_011259680.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin |
| IXO597_RS08725 | 1818653..1819123 | - | 471 | WP_228329666.1 | helix-turn-helix domain-containing protein | - |
| IXO597_RS08730 (IXO597_008820) | 1819589..1819831 | + | 243 | WP_011259679.1 | hypothetical protein | - |
| IXO597_RS08735 (IXO597_008825) | 1820256..1820765 | + | 510 | WP_011259678.1 | hypothetical protein | - |
| IXO597_RS08740 (IXO597_008830) | 1820782..1821314 | - | 533 | Protein_1659 | protein N-lysine methyltransferase family protein | - |
| IXO597_RS08745 (IXO597_008835) | 1821334..1822710 | - | 1377 | Protein_1660 | IS5 family transposase | - |
| IXO597_RS08750 (IXO597_008840) | 1822822..1822974 | - | 153 | Protein_1661 | SAM-dependent methyltransferase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 308 a.a. Molecular weight: 34114.16 Da Isoelectric Point: 5.4588
>T144343 WP_011259680.1 NZ_CP046495:1817650-1818573 [Xanthomonas oryzae pv. oryzae]
MNEPDKSRRTVAASVRARLLNKARAERLDFNLLLTRYALERVLYRLSVSEQQGQFLLKGALLFDIWFDIPHRPTHDADLL
GFGSTEIPHLEDLFRRISQIASDDGIVFQADSVKAAEIRKEANYAGVRVTMIGLLDGARCTVQIDIGFGDAVTPGPDNVQ
YPVILDGMPQPQLRVYPRYTVVAEKLEAMVKLGILNSRMKDYFDLWVLAGHSDFDGAVLATAIRATFECRGTAIPPGAPL
GLTDEFGLDEQKTKQWQAFLRKNTLEPMPLTTVIEALREFVLPVLAALAAGEGFDRQWRAGAGWDAA
MNEPDKSRRTVAASVRARLLNKARAERLDFNLLLTRYALERVLYRLSVSEQQGQFLLKGALLFDIWFDIPHRPTHDADLL
GFGSTEIPHLEDLFRRISQIASDDGIVFQADSVKAAEIRKEANYAGVRVTMIGLLDGARCTVQIDIGFGDAVTPGPDNVQ
YPVILDGMPQPQLRVYPRYTVVAEKLEAMVKLGILNSRMKDYFDLWVLAGHSDFDGAVLATAIRATFECRGTAIPPGAPL
GLTDEFGLDEQKTKQWQAFLRKNTLEPMPLTTVIEALREFVLPVLAALAAGEGFDRQWRAGAGWDAA
Download Length: 924 bp
>T144343 NZ_CP061913:c2419179-2418922 [Dactylosporangium vinaceum]
GTGACCGGAGCGATAAGTGCCAGCGAGGCCCGCCGGAGCCTGTTTCCGCTCATCGAACGGGTCAACCAGGACCACACGCC
CATCGAGATCGTGTCGCGGCACGGCAACGCGGTCCTCGTCAGCAAGGACGACTGGGACGCCATCGTCGAGACCGACTACC
TCCTGCGGACGCCGGCCAACGCCAGGCACCTCGCGGAGAGCATCGACACGTGGCGCGCGGGGAAGGCGACCGTGCGAGAG
CTGGACCTCGACGAGTGA
GTGACCGGAGCGATAAGTGCCAGCGAGGCCCGCCGGAGCCTGTTTCCGCTCATCGAACGGGTCAACCAGGACCACACGCC
CATCGAGATCGTGTCGCGGCACGGCAACGCGGTCCTCGTCAGCAAGGACGACTGGGACGCCATCGTCGAGACCGACTACC
TCCTGCGGACGCCGGCCAACGCCAGGCACCTCGCGGAGAGCATCGACACGTGGCGCGCGGGGAAGGCGACCGTGCGAGAG
CTGGACCTCGACGAGTGA
Antitoxin
Download Length: 200 a.a. Molecular weight: 22037.74 Da Isoelectric Point: 10.1240
>AT144343 WP_011409027.1 NZ_CP046495:1817054-1817653 [Xanthomonas oryzae pv. oryzae]
MDTTVDKLLELVRTRGLLRPHDLAPLGIPRVALTRAVRRGQLERVGRGLYGLVARPVSAHGTLAEVARRVPKGVVCLLSA
LRVHDLTTQAPFEVWLAIDNKAAAPKLDYPPLRLVRFSGPALSEGVEEHVVDGVPVHVTSVAKTVADCFKYRNKIGIDVA
LEALREAWVARRMTSDEIWHYAKIDRVANVMRPYLESLA
MDTTVDKLLELVRTRGLLRPHDLAPLGIPRVALTRAVRRGQLERVGRGLYGLVARPVSAHGTLAEVARRVPKGVVCLLSA
LRVHDLTTQAPFEVWLAIDNKAAAPKLDYPPLRLVRFSGPALSEGVEEHVVDGVPVHVTSVAKTVADCFKYRNKIGIDVA
LEALREAWVARRMTSDEIWHYAKIDRVANVMRPYLESLA
Download Length: 600 bp
>AT144343 NZ_CP061913:c2418925-2418665 [Dactylosporangium vinaceum]
GTGAAAATCCGGTTCACCGACGAGGGCTGGCACGACTACCTGTACTGGCAGGGGCAGGACCGCCGGACGCTCAGGCGGAT
CAACGCCCTGATCGCCGACCTCCAGCGCGACCCCGACGGCCCCGGCATCGGCAAGCCGGAGCTGCTGCGCAGCCACCTGT
CCGGCCTGCGGTCCCGCCGCATCGACGAGACCCACCGCCTCGTGTACACCGTGGAGGCCGGCGAGATCATCATCCTGGCC
TGCCGCTTCCACTACGAGTGA
GTGAAAATCCGGTTCACCGACGAGGGCTGGCACGACTACCTGTACTGGCAGGGGCAGGACCGCCGGACGCTCAGGCGGAT
CAACGCCCTGATCGCCGACCTCCAGCGCGACCCCGACGGCCCCGGCATCGGCAAGCCGGAGCTGCTGCGCAGCCACCTGT
CCGGCCTGCGGTCCCGCCGCATCGACGAGACCCACCGCCTCGTGTACACCGTGGAGGCCGGCGAGATCATCATCCTGGCC
TGCCGCTTCCACTACGAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0K0GMB6 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A854CLN1 |