Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relB-parE/ParE-RHH |
| Location | 2060072..2060628 | Replicon | chromosome |
| Accession | NZ_CP046488 | ||
| Organism | Xanthomonas oryzae pv. oryzae strain IXO35 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | - |
| Locus tag | IXO35_RS09625 | Protein ID | WP_229001948.1 |
| Coordinates | 2060377..2060628 (+) | Length | 84 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A854CIX2 |
| Locus tag | IXO35_RS09620 | Protein ID | WP_011408759.1 |
| Coordinates | 2060072..2060350 (+) | Length | 93 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IXO35_RS09600 (IXO35_009700) | 2055189..2055746 | - | 558 | WP_011259349.1 | DNA-3-methyladenine glycosylase | - |
| IXO35_RS09605 (IXO35_009705) | 2055896..2056861 | - | 966 | WP_109181970.1 | IS1595-like element ISXo5 family transposase | - |
| IXO35_RS09610 (IXO35_009710) | 2057442..2058626 | + | 1185 | WP_117231633.1 | IS256 family transposase | - |
| IXO35_RS09615 (IXO35_009720) | 2059532..2059876 | + | 345 | WP_198912817.1 | hypothetical protein | - |
| IXO35_RS09620 (IXO35_009725) | 2060072..2060350 | + | 279 | WP_011408759.1 | CopG family ribbon-helix-helix protein | Antitoxin |
| IXO35_RS09625 (IXO35_009730) | 2060377..2060628 | + | 252 | WP_229001948.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| IXO35_RS09630 (IXO35_009735) | 2060889..2061086 | + | 198 | WP_004541336.1 | hypothetical protein | - |
| IXO35_RS09635 (IXO35_009740) | 2061155..2061409 | + | 255 | WP_223293127.1 | hypothetical protein | - |
| IXO35_RS09640 (IXO35_009745) | 2061626..2061745 | + | 120 | Protein_1846 | IS3 family transposase | - |
| IXO35_RS09645 | 2061714..2061842 | + | 129 | WP_012444694.1 | hypothetical protein | - |
| IXO35_RS09655 (IXO35_009760) | 2062273..2062674 | - | 402 | WP_011259345.1 | H-NS family nucleoid-associated regulatory protein | - |
| IXO35_RS09660 (IXO35_009765) | 2062896..2063072 | + | 177 | Protein_1849 | DUF3606 domain-containing protein | - |
| IXO35_RS09665 (IXO35_009775) | 2063354..2063691 | + | 338 | Protein_1850 | ATP-dependent DNA ligase | - |
| IXO35_RS09670 (IXO35_009780) | 2063767..2064858 | - | 1092 | WP_041182166.1 | ribonuclease D | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 84 a.a. Molecular weight: 9603.92 Da Isoelectric Point: 9.9718
>T144333 WP_229001948.1 NZ_CP046488:2060377-2060628 [Xanthomonas oryzae pv. oryzae]
MLRLREFLRPKNPDAARRAGEAIRRGVQALGAHPRMGRLIEDLSEQYREWLIDFGDSGYVARYRFDGDTVTILAVRHQKE
AGY
MLRLREFLRPKNPDAARRAGEAIRRGVQALGAHPRMGRLIEDLSEQYREWLIDFGDSGYVARYRFDGDTVTILAVRHQKE
AGY
Download Length: 252 bp
>T144333 NZ_CP061853:c1253371-1252625 [Bacillus amyloliquefaciens]
ATGCTTTTGTTTTTTCAGATTATGGTGTGGACGATGGCGGCCGCACTCATTTTATATGTGTACGCATCCTGGCGGTATGA
GGCAAAGGTAAAAGAAAAAATGTTTGCCATCCGTAAAACGTGGTATTTACTATTTGTACTGGGCTCCATGGTCTATTGGA
CATATGATCCCGAATCGCTCTTTGCCGCATGGAGACAATATTTGATTGTTGCCGTCTGCTTTGCCCTTATTGATGCGTTT
ATCTTTTTGAGCGCGTATATCAAAAAGCTCGCCGGCAATGAATTAGAGACGGATACGCGGGAAATTTTAGAAGAAAATAA
CGAAATGCTTCACTCCTATCTTGAAAAACTGAAAACCTATCAATATCTGTTGAAAAATGAACCGATCCATGTATATTATG
GAAGTACAGAAGCTTATGCGGAAGGCATCAGCAGACTGCTGGCCGCTTATGCCGAAAAAATGAATGTCACGGCTTCCTTG
TGCGACTATTCCGCACAATCGGATAAGGACCGCTTGACGGAGCATATGCCTGATGCGGCAGACGTTCAGTCCCGTCTTAA
CCGTAAAGACGTCTACTATGATCAAAAAGGCAGGCTTGTGCTTATTCCGTTTACAGTCCAGAACCGCCATTACGTGATCA
AACTCACGTCGGAAAACCTGTTGACGGAATTCGATTATTTGCTTTTCACATCGCTAACGAGCATTTATGATTTAATGCTG
CCAATAGAAGAGGAAGGTGACGGTTAA
ATGCTTTTGTTTTTTCAGATTATGGTGTGGACGATGGCGGCCGCACTCATTTTATATGTGTACGCATCCTGGCGGTATGA
GGCAAAGGTAAAAGAAAAAATGTTTGCCATCCGTAAAACGTGGTATTTACTATTTGTACTGGGCTCCATGGTCTATTGGA
CATATGATCCCGAATCGCTCTTTGCCGCATGGAGACAATATTTGATTGTTGCCGTCTGCTTTGCCCTTATTGATGCGTTT
ATCTTTTTGAGCGCGTATATCAAAAAGCTCGCCGGCAATGAATTAGAGACGGATACGCGGGAAATTTTAGAAGAAAATAA
CGAAATGCTTCACTCCTATCTTGAAAAACTGAAAACCTATCAATATCTGTTGAAAAATGAACCGATCCATGTATATTATG
GAAGTACAGAAGCTTATGCGGAAGGCATCAGCAGACTGCTGGCCGCTTATGCCGAAAAAATGAATGTCACGGCTTCCTTG
TGCGACTATTCCGCACAATCGGATAAGGACCGCTTGACGGAGCATATGCCTGATGCGGCAGACGTTCAGTCCCGTCTTAA
CCGTAAAGACGTCTACTATGATCAAAAAGGCAGGCTTGTGCTTATTCCGTTTACAGTCCAGAACCGCCATTACGTGATCA
AACTCACGTCGGAAAACCTGTTGACGGAATTCGATTATTTGCTTTTCACATCGCTAACGAGCATTTATGATTTAATGCTG
CCAATAGAAGAGGAAGGTGACGGTTAA
Antitoxin
Download Length: 93 a.a. Molecular weight: 10826.11 Da Isoelectric Point: 4.9736
>AT144333 WP_011408759.1 NZ_CP046488:2060072-2060350 [Xanthomonas oryzae pv. oryzae]
MVTATSIKLDDELKGRVQHLAESRRRTPHWIMREAIEQYVEREEKREALNRDTLKAWDEFQATGLHVTAEEVDKWLASWG
TDDELPPPECHK
MVTATSIKLDDELKGRVQHLAESRRRTPHWIMREAIEQYVEREEKREALNRDTLKAWDEFQATGLHVTAEEVDKWLASWG
TDDELPPPECHK
Download Length: 279 bp
>AT144333 NZ_CP061853:c1252624-1252454 [Bacillus amyloliquefaciens]
ATGGAGCAGGCATTTCAAAACGGGCAGCCGGAACAAAGAGCGAAACCGTTCAAAATGTTTAAAAAACGTTCAATGACAAG
TATCGCAAGTTACCAGGTCAGCCCTCATACCGCCAGAATTTTCAAAGAAAACGAGCGGCTGATTGACAAGTATAAACAAA
AAAAAGCTTGA
ATGGAGCAGGCATTTCAAAACGGGCAGCCGGAACAAAGAGCGAAACCGTTCAAAATGTTTAAAAAACGTTCAATGACAAG
TATCGCAAGTTACCAGGTCAGCCCTCATACCGCCAGAATTTTCAAAGAAAACGAGCGGCTGATTGACAAGTATAAACAAA
AAAAAGCTTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|