Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2909644..2909851 | Replicon | chromosome |
| Accession | NZ_CP046445 | ||
| Organism | Leclercia sp. 119287 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2909683..2909785 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2909644..2909851 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GNG27_RS13970 | 2905677..2907119 | + | 1443 | WP_156264042.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GNG27_RS13975 | 2907223..2907462 | + | 240 | WP_032611546.1 | YebV family protein | - |
| GNG27_RS13980 | 2907567..2907758 | + | 192 | WP_142489952.1 | YebW family protein | - |
| GNG27_RS13985 | 2907759..2908400 | - | 642 | WP_156264043.1 | protein-serine/threonine phosphatase | - |
| GNG27_RS13990 | 2908579..2909526 | + | 948 | WP_156264044.1 | VirK/YbjX family protein | - |
| - | 2909644..2909851 | + | 208 | - | - | Antitoxin |
| - | 2909683..2909785 | - | 103 | - | - | Toxin |
| GNG27_RS13995 | 2909926..2910264 | - | 339 | WP_142489955.1 | YebY family protein | - |
| GNG27_RS14000 | 2910279..2911151 | - | 873 | WP_156264045.1 | copper homeostasis membrane protein CopD | - |
| GNG27_RS14005 | 2911153..2911527 | - | 375 | WP_142489957.1 | CopC domain-containing protein YobA | - |
| GNG27_RS14010 | 2911664..2911894 | + | 231 | WP_156264046.1 | DNA polymerase III subunit theta | - |
| GNG27_RS14015 | 2912002..2912661 | + | 660 | WP_156264047.1 | carbon-nitrogen hydrolase family protein | - |
| GNG27_RS14020 | 2912686..2913348 | + | 663 | WP_142489960.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T144280 NZ_CP046445:c2909785-2909683 [Leclercia sp. 119287]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 208 bp
>AT144280 NZ_CP046445:2909644-2909851 [Leclercia sp. 119287]
AAAGTCCGCAACAGGAAAATGCGTTTACTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAA
ATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGAC
GACGCCAGGTTTTCCAGTCCGCAGCAAAAGTGGCCTGAAAAAAAGCGT
AAAGTCCGCAACAGGAAAATGCGTTTACTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAA
ATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGAC
GACGCCAGGTTTTCCAGTCCGCAGCAAAAGTGGCCTGAAAAAAAGCGT
