Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2073297..2073568 | Replicon | chromosome |
| Accession | NZ_CP046416 | ||
| Organism | Escherichia coli strain LZYWN_4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2073427..2073530 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2073297..2073568 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJV83_RS10105 | 2069852..2070514 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| GJV83_RS10110 | 2070538..2071194 | - | 657 | WP_182116893.1 | carbon-nitrogen hydrolase family protein | - |
| GJV83_RS10115 | 2071296..2071526 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GJV83_RS10120 | 2071665..2072039 | + | 375 | WP_094322552.1 | CopC domain-containing protein YobA | - |
| GJV83_RS10125 | 2072043..2072915 | + | 873 | WP_094322553.1 | copper homeostasis membrane protein CopD | - |
| GJV83_RS10130 | 2072928..2073269 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2073297..2073568 | - | 272 | - | - | Antitoxin |
| - | 2073427..2073530 | + | 104 | - | - | Toxin |
| GJV83_RS10135 | 2073665..2074321 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| GJV83_RS10140 | 2074322..2074513 | - | 192 | WP_001338167.1 | YebW family protein | - |
| GJV83_RS10145 | 2074618..2074854 | - | 237 | WP_206970355.1 | DUF1480 family protein | - |
| GJV83_RS10150 | 2074972..2076411 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T144234 NZ_CP046416:2073427-2073530 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT144234 NZ_CP046416:c2073568-2073297 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
