Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RHH(antitoxin)
Location 147320..147825 Replicon chromosome
Accession NZ_CP046406
Organism Pseudomonas aeruginosa strain SE5458

Toxin (Protein)


Gene name parE Uniprot ID V6A7K8
Locus tag GNT62_RS00655 Protein ID WP_003083773.1
Coordinates 147320..147601 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID A0A1C7BDS9
Locus tag GNT62_RS00660 Protein ID WP_003083775.1
Coordinates 147598..147825 (-) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GNT62_RS00630 142571..143920 + 1350 WP_003137006.1 C4-dicarboxylate transporter DctA -
GNT62_RS00635 143969..144655 + 687 WP_003083762.1 FadR family transcriptional regulator -
GNT62_RS00640 144756..145490 + 735 WP_003083764.1 GntR family transcriptional regulator -
GNT62_RS00645 145694..146080 + 387 WP_003083767.1 aegerolysin family protein -
GNT62_RS00650 146112..147020 - 909 WP_003083769.1 LysR family transcriptional regulator -
GNT62_RS00655 147320..147601 - 282 WP_003083773.1 type II toxin-antitoxin system toxin ParE Toxin
GNT62_RS00660 147598..147825 - 228 WP_003083775.1 CopG family ribbon-helix-helix protein Antitoxin
GNT62_RS00665 148001..148621 - 621 WP_003101226.1 hypothetical protein -
GNT62_RS00670 148722..149222 + 501 WP_003083778.1 LEA type 2 family protein -
GNT62_RS00675 149295..149636 + 342 WP_014603467.1 alkylphosphonate utilization protein -
GNT62_RS00680 149718..151145 - 1428 WP_003083784.1 GABA permease -
GNT62_RS00685 151314..152807 - 1494 WP_003083788.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-87)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-42)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10462.19 Da        Isoelectric Point: 10.0435

>T144211 WP_003083773.1 NZ_CP046406:c147601-147320 [Pseudomonas aeruginosa]
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLERWPFSAPFRVKGKE
IQILRIDRVEITP

Download         Length: 282 bp

>T144211 NZ_CP061778:c449564-449286 [Pseudomonas aeruginosa]
ATGATTCTGACCTTTCGCTGCGACGAGACTCGTCAGCTTTTTGAGACGGGTCTTTCGAGACGGTGGGGAGCGATCCTCAC
AGTCGCTACGCGTAAGCTCGCAATGCTTCATGCGGCTACGGAGCTTCGAGACTTGCGCTCTCCACCTGGAAACCGGTTGG
AGCCGTTGCAGGGAAAGCGGGCGGGCCAACATAGCATCAGGATCAATGACCAGTGGCGTGTCTGTTTCGTCTGGACGGAT
GCGGGTCCCGAAGAAGTCGAAATAGTTGATTACCACTGA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8556.58 Da        Isoelectric Point: 5.5740

>AT144211 WP_003083775.1 NZ_CP046406:c147825-147598 [Pseudomonas aeruginosa]
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHTEIEKRWGLQ

Download         Length: 228 bp

>AT144211 NZ_CP061778:c449274-448969 [Pseudomonas aeruginosa]
ATGGCTACCAATGGTATGCGCCCCATCCATCCTGGGGAAATATTGCGCGATGAGTTTCTGATGGAGTTGGATATCTCTCC
AGCTGCTCTAGCACGCGCTTTGAAAGTCTCCGCTCCGACAGTGAATGATATCGTTCGTGAGCAGCGTGGTATCTCCGCAG
ATATGGCGATTCGTCTGGGGCGTTACTTTGATACGTCCGCTCAGTTCTGGATGAATCTCCAGAGTGAGTATTCGTTAGCA
ACTGCTTATGCGGCGAATGGCGAGCAGATCGAACATGAGATTGAGCCGCTGCTTGCTCAGGGATAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6XRW

Antitoxin

Source ID Structure
AlphaFold DB A0A1C7BDS9

References