Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1922228..1922373 | Replicon | chromosome |
| Accession | NZ_CP046381 | ||
| Organism | Klebsiella pneumoniae strain BD_DM_782 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1922264..1922366 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1922228..1922373 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GM011_RS09260 | 1917358..1919418 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| GM011_RS09265 | 1919422..1920081 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| GM011_RS09270 | 1920160..1920390 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| GM011_RS09275 | 1920503..1920877 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| GM011_RS09280 | 1920881..1921750 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| GM011_RS09285 | 1921767..1922105 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1922228..1922373 | - | 146 | - | - | Antitoxin |
| - | 1922264..1922366 | + | 103 | - | - | Toxin |
| GM011_RS09290 | 1922742..1922885 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| GM011_RS09295 | 1922990..1923958 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| GM011_RS09300 | 1924115..1924768 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| GM011_RS09305 | 1924765..1924956 | - | 192 | WP_002911395.1 | YebW family protein | - |
| GM011_RS09310 | 1925054..1925293 | - | 240 | WP_002911393.1 | YebV family protein | - |
| GM011_RS09315 | 1925409..1926842 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T144132 NZ_CP046381:1922264-1922366 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT144132 NZ_CP046381:c1922373-1922228 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
