Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VII | Classification (family/domain) | HepT-MntA/HepT(toxin) |
Location | 3102544..3103343 | Replicon | chromosome |
Accession | NZ_CP046377 | ||
Organism | Pectobacterium polaris strain PZ1 |
Toxin (Protein)
Gene name | hepT | Uniprot ID | A0A6P1S6Q8 |
Locus tag | GMX10_RS14135 | Protein ID | WP_039482641.1 |
Coordinates | 3102544..3102963 (-) | Length | 140 a.a. |
Antitoxin (Protein)
Gene name | mntA | Uniprot ID | A0A6P1S5H0 |
Locus tag | GMX10_RS14140 | Protein ID | WP_039482638.1 |
Coordinates | 3102960..3103343 (-) | Length | 128 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
GMX10_RS14120 | 3098209..3098790 | + | 582 | WP_039482649.1 | dCTP deaminase | - |
GMX10_RS14125 | 3098854..3100689 | + | 1836 | WP_039482646.1 | outer membrane assembly protein AsmA | - |
GMX10_RS14130 | 3101148..3102500 | + | 1353 | WP_161546882.1 | anaerobic C4-dicarboxylate transporter DcuC | - |
GMX10_RS14135 | 3102544..3102963 | - | 420 | WP_039482641.1 | DUF86 domain-containing protein | Toxin |
GMX10_RS14140 | 3102960..3103343 | - | 384 | WP_039482638.1 | nucleotidyltransferase domain-containing protein | Antitoxin |
GMX10_RS14145 | 3103483..3105069 | - | 1587 | WP_039482635.1 | TerC family protein | - |
GMX10_RS14150 | 3105803..3106900 | + | 1098 | WP_161546883.1 | UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase | - |
GMX10_RS14155 | 3107018..3108154 | + | 1137 | WP_161546884.1 | polysaccharide export protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 140 a.a. Molecular weight: 16138.51 Da Isoelectric Point: 7.3845
>T144120 WP_039482641.1 NZ_CP046377:c3102963-3102544 [Pectobacterium polaris]
MTDILLNKSSTIQRCLRRIREEFDTKEEFRQNFTKQDSVILNIQRACEAAIDIANYLIRIKHLGIPQSSRDSFALLAANQ
IITIDLSDNLQKMVGLRNIAVHDYQALNLDIVIHVISHRLSDFERFIKEVARYSDSQHL
MTDILLNKSSTIQRCLRRIREEFDTKEEFRQNFTKQDSVILNIQRACEAAIDIANYLIRIKHLGIPQSSRDSFALLAANQ
IITIDLSDNLQKMVGLRNIAVHDYQALNLDIVIHVISHRLSDFERFIKEVARYSDSQHL
Download Length: 420 bp
>T144120 NZ_CP061749:1938440-1938691 [Escherichia coli O15:H12]
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTTATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGCTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCAAAGGAACGGAAAAGGAC
ATCATTGAGTGA
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTTATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGCTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCAAAGGAACGGAAAAGGAC
ATCATTGAGTGA
Antitoxin
Download Length: 128 a.a. Molecular weight: 14312.49 Da Isoelectric Point: 5.2241
>AT144120 WP_039482638.1 NZ_CP046377:c3103343-3102960 [Pectobacterium polaris]
MFDKIVSTLKKQIPDIKIIYLFGSQATGNARADSDVDIAILATRALDPVERWELSNQLAKEVGRDVDLIDLLQASTVLKM
EIVRNGKLLYDAKAAAGEFEMTTLSMYQHLQRERADIIRSFNQDLKA
MFDKIVSTLKKQIPDIKIIYLFGSQATGNARADSDVDIAILATRALDPVERWELSNQLAKEVGRDVDLIDLLQASTVLKM
EIVRNGKLLYDAKAAAGEFEMTTLSMYQHLQRERADIIRSFNQDLKA
Download Length: 384 bp
>AT144120 NZ_CP061749:1938688-1938942 [Escherichia coli O15:H12]
GTGAAACTAATCTGGTCTGAGGAATCATGGGACGATTATCTGTACTGGCAGGAAACAGATAAGCGAATTGTTAAAAAGAT
CAATGAACTTATCAAAGATACCCGCAGAACGCCATTTGAAGGTAAGGGGAAGCCAGAACCCCTGAAACATAATTTGTCAG
GTTTCTGGTCCCGACGCATTACAGAGGAGCACCGTCTGGTATACGCGGTTACCGACGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA
GTGAAACTAATCTGGTCTGAGGAATCATGGGACGATTATCTGTACTGGCAGGAAACAGATAAGCGAATTGTTAAAAAGAT
CAATGAACTTATCAAAGATACCCGCAGAACGCCATTTGAAGGTAAGGGGAAGCCAGAACCCCTGAAACATAATTTGTCAG
GTTTCTGGTCCCGACGCATTACAGAGGAGCACCGTCTGGTATACGCGGTTACCGACGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A6P1S6Q8 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A6P1S5H0 |