Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 1186364..1186862 Replicon chromosome
Accession NZ_CP046359
Organism Streptococcus pneumoniae strain 573

Toxin (Protein)


Gene name relE Uniprot ID B1IC19
Locus tag GL188_RS05925 Protein ID WP_001809704.1
Coordinates 1186364..1186618 (-) Length 85 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID B1IC20
Locus tag GL188_RS05930 Protein ID WP_000208080.1
Coordinates 1186620..1186862 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GL188_RS05920 1184418..1186289 - 1872 WP_000150986.1 Eco57I restriction-modification methylase domain-containing protein -
GL188_RS05925 1186364..1186618 - 255 WP_001809704.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
GL188_RS05930 1186620..1186862 - 243 WP_000208080.1 hypothetical protein Antitoxin
GL188_RS05935 1186953..1187762 - 810 WP_001289493.1 MBL fold metallo-hydrolase -
GL188_RS05940 1187764..1189113 - 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK -
GL188_RS05945 1189106..1189810 - 705 WP_000722076.1 response regulator transcription factor -
GL188_RS05950 1189865..1191040 - 1176 WP_000886147.1 A/G-specific adenine glycosylase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(7-84)

Antitoxin

Protein of unknown function DUF6290

(1-73)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10098.79 Da        Isoelectric Point: 10.7632

>T144091 WP_001809704.1 NZ_CP046359:c1186618-1186364 [Streptococcus pneumoniae]
MYKLVPTRRFIKQLKKLDRYTQKLITNYLQTNVLEDPRRHGKALVGNRVGQWRYRIGNYRVIVQIVDDELVVATLEVGHR
RDIY

Download         Length: 255 bp

>T144091 NZ_CP061717:c26102-25758 [Pediococcus acidilactici]
ATGGTAAGCCAAGGTGATATATTTTATGTTAACTTTAATCCAAGCCGTGGTCATGAACAGATGAATAAGCGACCAGCCAT
TGCTCTAAGCAATGATTTAGTCTGTCAGACAAGTAACATGACGATTGTGGCTCCAATTAGCAGTACCAAGCGTAATTTTC
CAATGTATCATCGACTAACTAGTAGCCAAACAGTATATGGAAAAGTATTATTAGATCAAACCATAGCCTTAGACTTACGG
GCAAGACATGTCACTGATGAAACTATTGTCGATCATGTATCGCGTGAAGAACTAGAAGAAATAATCACTTTGTACAAATT
ATTGTTTAGTATTGATGACAAATAG

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9205.46 Da        Isoelectric Point: 4.0527

>AT144091 WP_000208080.1 NZ_CP046359:c1186862-1186620 [Streptococcus pneumoniae]
MTTITLKVSEADKTFMKAMAKFEGVSLSELIRTKTLEALEDEYDARVADLAYQEYLEDLEKGVEPITWEEMMHDLGLKDE

Download         Length: 243 bp

>AT144091 NZ_CP061717:c26359-26096 [Pediococcus acidilactici]
ATGGAACTTATTAAAGAACAAACACGCTTAGCAAAGTGGGGAAACTCGAAAGCTGCTAGAATTCCTAGCCAAATTATTAA
ACAACTGAAATTAGATGATAACCAAGATATGACAATAACCATTGAAAATGGATCAATTGTTTTAACACCAATAAAAAAGA
ACCCAACCAATATTCACGAACTATTTAAGGATTGGCAAGATGACGGGAAAAGGGATCACGAGCTTGATTGGGGAAAGTCA
GAAGGTAATGAACTTCAATGGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A853PEW4

Antitoxin

Source ID Structure
AlphaFold DB A0A064C2J7

References