Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4706358..4706501 | Replicon | chromosome |
| Accession | NZ_CP046348 | ||
| Organism | Citrobacter portucalensis strain FDAARGOS_738 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4706393..4706496 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4706358..4706501 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOC46_RS22885 | 4702805..4703467 | - | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| FOC46_RS22890 | 4703491..4704147 | - | 657 | WP_003833801.1 | carbon-nitrogen hydrolase family protein | - |
| FOC46_RS22895 | 4704254..4704484 | - | 231 | WP_003833800.1 | DNA polymerase III subunit theta | - |
| FOC46_RS22900 | 4704628..4705002 | + | 375 | WP_003833799.1 | CopC domain-containing protein YobA | - |
| FOC46_RS22905 | 4705006..4705878 | + | 873 | WP_003833795.1 | copper homeostasis membrane protein CopD | - |
| FOC46_RS22910 | 4705899..4706237 | + | 339 | WP_003833793.1 | YebY family protein | - |
| - | 4706358..4706501 | - | 144 | - | - | Antitoxin |
| - | 4706393..4706496 | + | 104 | - | - | Toxin |
| FOC46_RS22915 | 4706650..4707291 | + | 642 | WP_003833791.1 | protein-serine/threonine phosphatase | - |
| FOC46_RS22920 | 4707292..4707483 | - | 192 | WP_003833789.1 | YebW family protein | - |
| FOC46_RS22925 | 4707586..4707822 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| FOC46_RS22930 | 4707923..4709311 | - | 1389 | WP_032934585.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T144061 NZ_CP046348:4706393-4706496 [Citrobacter portucalensis]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT144061 NZ_CP046348:c4706501-4706358 [Citrobacter portucalensis]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
