Detailed information of TA system TA143980

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/AbrB(antitoxin)
• Location: 3210728..3211374
• Replicon: chromosome
• Accession: NZ_CP046309
• Organism: Mycobacterium tuberculosis strain FDAARGOS_750

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TQ88
• Locus tag: FOC58_RS15005
• Protein ID: WP_003403137.1
• Coordinates: 3210728..3211141 (-)
• Length: 138 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TQ89
• Locus tag: FOC58_RS15010
• Protein ID: WP_003403139.1
• Coordinates: 3211138..3211374 (-)
• Length: 79 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FOC58_RS14985	3206811..3208361	+	1551	WP_003403119.1	MCE family protein	-
FOC58_RS14990	3208413..3208805	-	393	WP_003403122.1	type II toxin-antitoxin system toxin ribonuclease C4	-
FOC58_RS14995	3208802..3209059	-	258	WP_003403125.1	type II toxin-antitoxin system antitoxin VapB4	-
FOC58_RS15000	3209242..3210477	-	1236	WP_003403128.1	ATP-binding protein	-
FOC58_RS15005	3210728..3211141	-	414	WP_003403137.1	type II toxin-antitoxin system VapC family toxin	Toxin
FOC58_RS15010	3211138..3211374	-	237	WP_003403139.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	Antitoxin
FOC58_RS15015	3211478..3211984	-	507	WP_003900973.1	two component system sensor kinase HK1	-
FOC58_RS15020	3212098..3212628	-	531	WP_003917320.1	two component system sensor kinase HK2	-
FOC58_RS15025	3212612..3213307	-	696	WP_003918099.1	two-component system response regulator TcrA	-
FOC58_RS15030	3213430..3213741	+	312	WP_003403164.1	hypothetical protein	-
FOC58_RS15035	3213813..3214763	+	951	WP_003900184.1	DUF1259 domain-containing protein	-
FOC58_RS15040	3215004..3215588	+	585	WP_003403171.1	IS607-like element IS1536 family transposase	-
FOC58_RS15045	3215590..3216300	+	711	Protein_2943	transposase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (7-126)

Antitoxin

• SpoVT-AbrB domain (3-43)

Sequences

Toxin

Protein

• Length: 138 a.a.
• Molecular weight: 14786.14 Da
• Isoelectric Point: 8.1405

>T143980 WP_003403137.1 NZ_CP046309:c3211141-3210728 [Mycobacterium tuberculosis]
VKPPLAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAARLLTERFAAPLLLSSR
TTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKDTYEKIGVHVVVAA

Nucleotide

• Length: 414 bp

>T143980 NZ_CP046309:c3211141-3210728 [Mycobacterium tuberculosis]
GTGAAACCGCCGCTGGCAGTGGACACCAGCGTCGCGATTCCGTTGCTGGTACGGACCCATACCGCGCATGCGGCGGTTGT
CGCCTGGTGGGCACATCGGGAGGCCGCGCTGTGCGGGCACGCCCTGGCCGAAACCTACTCCGTGCTGACCCGCCTGCCGC
GTGACCTACGACTGGCACCGATGGACGCCGCGCGGCTTCTTACCGAACGCTTTGCGGCACCGCTGTTGTTGAGTTCCCGC
ACCACTGAACATCTCCCACGCGTGCTGGCCCAATTCGAGATCACTGGTGGCGCGGTCTATGACGCTCTCGTGGCCCTTGC
CGCCGCCGAGCACCGGGCTGAACTCGCCACACGCGATGCTCGAGCCAAGGACACTTACGAAAAGATCGGCGTCCACGTCG
TTGTCGCCGCGTGA

Antitoxin

Protein

• Length: 79 a.a.
• Molecular weight: 8212.41 Da
• Isoelectric Point: 5.0351

>AT143980 WP_003403139.1 NZ_CP046309:c3211374-3211138 [Mycobacterium tuberculosis]
MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATGETTIDDEVVFGLIDSGRK

Nucleotide

• Length: 237 bp

>AT143980 NZ_CP046309:c3211374-3211138 [Mycobacterium tuberculosis]
ATGAAGGCTGTTGTGGATGCGGCTGGCCGCATCGTCGTACCCAAACCGCTGCGCGAAGCCTTGGGGCTGCAACCGGGGTC
CACCGTGGAAATATCCCGCTATGGCGCTGGTCTCCACCTGATTCCCACCGGACGAACAGCGCGTCTCGAAGAGGAGAATG
GCGTACTGGTGGCCACCGGTGAGACCACGATCGACGATGAGGTCGTGTTCGGCCTTATCGATAGCGGCCGGAAGTGA

Structures

Toxin

• AlphaFold DB: G0TQ88

Antitoxin

• AlphaFold DB: G0TQ89