Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2543483..2543574 Replicon chromosome
Accession NZ_CP046293
Organism Yersinia intermedia strain FDAARGOS_730

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2543491..2543574 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2543483..2543574 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FOC38_RS11990 2539579..2540838 + 1260 WP_005182999.1 mechanosensitive ion channel -
FOC38_RS11995 2541185..2541361 + 177 WP_032905817.1 GhoT/OrtT family toxin -
FOC38_RS12000 2541792..2542229 + 438 WP_005183002.1 universal stress protein UspF -
FOC38_RS22690 2542340..2542456 + 117 WP_161597802.1 phage integrase Arm DNA-binding domain-containing protein -
FOC38_RS12005 2542624..2543415 + 792 WP_196774704.1 tyrosine-type recombinase/integrase -
- 2543483..2543574 + 92 - - Antitoxin
- 2543491..2543574 - 84 - - Toxin
FOC38_RS12010 2543760..2544101 - 342 WP_005183006.1 YebY family protein -
FOC38_RS12015 2544198..2545082 - 885 WP_005183008.1 copper homeostasis membrane protein CopD -
FOC38_RS12020 2545084..2545470 - 387 WP_005183010.1 CopC domain-containing protein YobA -
FOC38_RS12025 2545859..2546362 - 504 WP_005183013.1 non-heme ferritin -
FOC38_RS12030 2546753..2546983 + 231 WP_005183015.1 DNA polymerase III subunit theta -
FOC38_RS12035 2547037..2547993 - 957 WP_032905818.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 84 bp

>T143841 NZ_CP046293:c2543574-2543491 [Yersinia intermedia]
ATTAATGCCAACTTTTAGCGCACGGCTCTGTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTTT
TTTT

Antitoxin


Download         Length: 92 bp

>AT143841 NZ_CP046293:2543483-2543574 [Yersinia intermedia]
AACAAATTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGACAGAGCCGTGCGCTAAAA
GTTGGCATTAAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References