Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2695486..2695685 | Replicon | chromosome |
| Accession | NZ_CP046271 | ||
| Organism | Enterobacter hormaechei strain E70 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2695489..2695592 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2695486..2695685 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GMA21_RS12875 | 2691744..2693192 | + | 1449 | WP_195206357.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GMA21_RS12880 | 2693299..2693538 | + | 240 | WP_003859885.1 | YebV family protein | - |
| GMA21_RS12885 | 2693573..2694217 | - | 645 | WP_003859884.1 | protein-serine/threonine phosphatase | - |
| GMA21_RS12890 | 2694385..2695365 | + | 981 | WP_003859879.1 | VirK/YbjX family protein | - |
| GMA21_RS12895 | 2695411..2695608 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2695486..2695685 | + | 200 | - | - | Antitoxin |
| - | 2695489..2695592 | - | 104 | - | - | Toxin |
| GMA21_RS12900 | 2695734..2696072 | - | 339 | WP_003859787.1 | YebY family protein | - |
| GMA21_RS12905 | 2696089..2696958 | - | 870 | WP_003859786.1 | copper homeostasis membrane protein CopD | - |
| GMA21_RS12910 | 2696960..2697331 | - | 372 | WP_003859785.1 | CopC domain-containing protein YobA | - |
| GMA21_RS12915 | 2697469..2697699 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| GMA21_RS12920 | 2697811..2698461 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| GMA21_RS12925 | 2698486..2699148 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T143799 NZ_CP046271:c2695592-2695489 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT143799 NZ_CP046271:2695486-2695685 [Enterobacter hormaechei]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
