Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2878937..2879087 | Replicon | chromosome |
| Accession | NZ_CP046251 | ||
| Organism | Leclercia adecarboxylata strain P12375 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2878949..2879051 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2878937..2879087 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GLX29_RS13575 | 2874941..2876383 | + | 1443 | WP_196221574.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GLX29_RS13580 | 2876487..2876726 | + | 240 | WP_032611546.1 | YebV family protein | - |
| GLX29_RS13585 | 2876830..2877021 | + | 192 | WP_032611549.1 | YebW family protein | - |
| GLX29_RS13590 | 2877022..2877666 | - | 645 | WP_155166974.1 | protein-serine/threonine phosphatase | - |
| GLX29_RS13595 | 2877845..2878792 | + | 948 | WP_155166975.1 | VirK/YbjX family protein | - |
| - | 2878937..2879087 | + | 151 | - | - | Antitoxin |
| - | 2878949..2879051 | - | 103 | - | - | Toxin |
| GLX29_RS13600 | 2879193..2879531 | - | 339 | WP_032611900.1 | YebY family protein | - |
| GLX29_RS13605 | 2879546..2880418 | - | 873 | WP_032611902.1 | copper homeostasis membrane protein CopD | - |
| GLX29_RS13610 | 2880420..2880794 | - | 375 | WP_032611904.1 | CopC domain-containing protein YobA | - |
| GLX29_RS13615 | 2880931..2881161 | + | 231 | WP_155166976.1 | DNA polymerase III subunit theta | - |
| GLX29_RS13620 | 2881269..2881925 | + | 657 | WP_032611908.1 | carbon-nitrogen hydrolase family protein | - |
| GLX29_RS13625 | 2881950..2882612 | + | 663 | WP_032611910.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T143739 NZ_CP046251:c2879051-2878949 [Leclercia adecarboxylata]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 151 bp
>AT143739 NZ_CP046251:2878937-2879087 [Leclercia adecarboxylata]
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
