Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3026902..3027053 | Replicon | chromosome |
| Accession | NZ_CP046116 | ||
| Organism | Enterobacter cloacae strain CBG15936 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3026915..3027018 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3026902..3027053 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJ694_RS14280 | 3023186..3024628 | + | 1443 | WP_129252440.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GJ694_RS14285 | 3024734..3024958 | + | 225 | Protein_2803 | DUF1480 family protein | - |
| GJ694_RS14290 | 3024999..3025643 | - | 645 | WP_129252438.1 | protein-serine/threonine phosphatase | - |
| GJ694_RS14295 | 3025810..3026751 | + | 942 | WP_020690823.1 | VirK/YbjX family protein | - |
| - | 3026902..3027053 | + | 152 | - | - | Antitoxin |
| - | 3026915..3027018 | - | 104 | - | - | Toxin |
| GJ694_RS14300 | 3027158..3027496 | - | 339 | WP_013096105.1 | YebY family protein | - |
| GJ694_RS14305 | 3027513..3028382 | - | 870 | WP_038984481.1 | copper homeostasis membrane protein CopD | - |
| GJ694_RS14310 | 3028384..3028755 | - | 372 | WP_020690820.1 | CopC domain-containing protein YobA | - |
| GJ694_RS14315 | 3028893..3029123 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| GJ694_RS14320 | 3029233..3029883 | + | 651 | WP_129252436.1 | carbon-nitrogen hydrolase family protein | - |
| GJ694_RS14325 | 3029907..3030569 | + | 663 | WP_020690817.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T143656 NZ_CP046116:c3027018-3026915 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT143656 NZ_CP046116:3026902-3027053 [Enterobacter cloacae]
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
