Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) chpSB/PRK09812-ChpS
Location 4092767..4093362 Replicon chromosome
Accession NZ_CP046025
Organism Escherichia coli strain C439

Toxin (Protein)


Gene name chpB Uniprot ID U9XNP6
Locus tag GJH08_RS19920 Protein ID WP_000239577.1
Coordinates 4092767..4093117 (-) Length 117 a.a.

Antitoxin (Protein)


Gene name chpS Uniprot ID U9Y2K1
Locus tag GJH08_RS19925 Protein ID WP_001223208.1
Coordinates 4093111..4093362 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GJH08_RS19900 4088213..4089235 - 1023 WP_001313531.1 ABC transporter permease -
GJH08_RS19905 4089249..4090751 - 1503 WP_000205805.1 sugar ABC transporter ATP-binding protein -
GJH08_RS19910 4090891..4091847 - 957 WP_000265913.1 galactofuranose ABC transporter substrate-binding protein YtfQ -
GJH08_RS19915 4092157..4092687 + 531 WP_000055075.1 inorganic diphosphatase -
GJH08_RS19920 4092767..4093117 - 351 WP_000239577.1 endoribonuclease toxin ChpB Toxin
GJH08_RS19925 4093111..4093362 - 252 WP_001223208.1 type II toxin-antitoxin system antitoxin ChpS Antitoxin
GJH08_RS19930 4093574..4093915 - 342 WP_001219160.1 gamma-glutamylcyclotransferase -
GJH08_RS19935 4093918..4097697 - 3780 WP_000060911.1 autotransporter assembly complex protein TamB -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(8-114)

Antitoxin

SpoVT-AbrB domain

(6-49)


Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 12492.40 Da        Isoelectric Point: 5.5572

>T143424 WP_000239577.1 NZ_CP046025:c4093117-4092767 [Escherichia coli]
MVKKSEFERGDIVLVGFDPASGHEQQGAGRPALVLSVQAFNQLGMTLVAPITQGGNFARYAGFSVPLHCEEGDVHGVVLV
NQVRMMDLHARLAKRIGLAADEVVEEALLRLQAVVE

Download         Length: 351 bp

>T143424 NZ_CP061083:1533119-1533433 [Pantoea sp. MT58]
ATGCAATTCACTGTATACGGTAATACCGGGAAAAGCGTCGTTTACCCGCTGTTGCTGGATGTCACGAGCGATATTATTGG
GCAATTAAATCGTCGGATAGTGATCCCATTGCTCCCTATTGAAAAGTATCCGGCAGGCCGCCGACCGGATCGCCTTGTCC
CCGTCGTCAGGCTGACGGATGGCAAAGAATACGCTGTAATGACCCACGAGCTGGCAAGTATCCCTGTCCATGCCTTAGGT
GCGGTGTTTTGTGATGCTTCGCAGTACCGCACTCAGGTAAAGGCGGCAATAGATTTCCTGATTGACGGAGTTTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9271.58 Da        Isoelectric Point: 4.4201

>AT143424 WP_001223208.1 NZ_CP046025:c4093362-4093111 [Escherichia coli]
MRITIKRWGNSAGMVIPNIVMKELNLQPGQSVEAQVSNNQLILTPISRRYSLDELLAQCDMNAAELSEQDVWGKSTPAGD
EIW

Download         Length: 252 bp

>AT143424 NZ_CP061083:1532880-1533116 [Pantoea sp. MT58]
ATGACCGCGAAACAACGCAACACGCAGAGCGTGACCATGACAGTAGAGCGTGCCTTACTGGTAAGAGCGCGTGAAGCGGG
CATTAATCTGAGTGCTACCCTGACAGCTGCCCTGGATGCAGAGCTTCGCTCTCATGAAGCGAAAAAATGGCAGGAAGAAA
ACAGAGAGGCTCTCGCAGCATTAAATCGTTTTCATGATGAGCAGGGGTGTTTCAGCGATGAATACAGGACGTTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB U9XNP6

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9LQ26

References