Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1987103..1987374 | Replicon | chromosome |
| Accession | NZ_CP046009 | ||
| Organism | Escherichia coli strain 1919D62 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1987233..1987336 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1987103..1987374 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJD96_RS11170 | 1983658..1984320 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| GJD96_RS11175 | 1984344..1985000 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| GJD96_RS11180 | 1985102..1985332 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GJD96_RS11185 | 1985471..1985845 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| GJD96_RS11190 | 1985849..1986721 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| GJD96_RS11195 | 1986734..1987075 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1987103..1987374 | - | 272 | - | - | Antitoxin |
| - | 1987233..1987336 | + | 104 | - | - | Toxin |
| GJD96_RS11200 | 1987471..1988127 | + | 657 | WP_095885616.1 | protein-serine/threonine phosphatase | - |
| GJD96_RS11205 | 1988128..1988319 | - | 192 | WP_001338167.1 | YebW family protein | - |
| GJD96_RS11210 | 1988424..1988660 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| GJD96_RS11215 | 1988778..1990217 | - | 1440 | WP_001400472.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T143349 NZ_CP046009:1987233-1987336 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT143349 NZ_CP046009:c1987374-1987103 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
