Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1977244..1977515 | Replicon | chromosome |
| Accession | NZ_CP046006 | ||
| Organism | Escherichia coli strain 1919D3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1977374..1977477 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1977244..1977515 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJD95_RS11000 | 1973799..1974461 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| GJD95_RS11005 | 1974485..1975141 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| GJD95_RS11010 | 1975243..1975473 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GJD95_RS11015 | 1975612..1975986 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| GJD95_RS11020 | 1975990..1976862 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| GJD95_RS11025 | 1976875..1977216 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1977244..1977515 | - | 272 | - | - | Antitoxin |
| - | 1977374..1977477 | + | 104 | - | - | Toxin |
| GJD95_RS11030 | 1977612..1978268 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| GJD95_RS11035 | 1978269..1978460 | - | 192 | WP_000457842.1 | YebW family protein | - |
| GJD95_RS11040 | 1978565..1978801 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GJD95_RS11045 | 1978919..1980358 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T143327 NZ_CP046006:1977374-1977477 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT143327 NZ_CP046006:c1977515-1977244 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
