Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/ParE-YafN |
Location | 296205..296740 | Replicon | plasmid pAUSMDU00010532_01 |
Accession | NZ_CP045959 | ||
Organism | Salmonella enterica subsp. enterica serovar Birkenhead strain AUSMDU00010532 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | GJE06_RS23995 | Protein ID | WP_154074340.1 |
Coordinates | 296205..296492 (-) | Length | 96 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | GJE06_RS24000 | Protein ID | WP_154074341.1 |
Coordinates | 296489..296740 (-) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
GJE06_RS23975 | 291770..291970 | - | 201 | Protein_279 | transposase | - |
GJE06_RS23980 | 292302..292928 | - | 627 | Protein_280 | IS6 family transposase | - |
GJE06_RS23985 | 292915..293445 | + | 531 | Protein_281 | DDE-type integrase/transposase/recombinase | - |
GJE06_RS23990 | 295589..296119 | - | 531 | Protein_282 | IS3 family transposase | - |
GJE06_RS23995 | 296205..296492 | - | 288 | WP_154074340.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
GJE06_RS24000 | 296489..296740 | - | 252 | WP_154074341.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
GJE06_RS24005 | 297168..297560 | - | 393 | WP_154074342.1 | helix-turn-helix transcriptional regulator | - |
GJE06_RS24015 | 298261..299277 | + | 1017 | WP_154074343.1 | IS110 family transposase | - |
GJE06_RS24020 | 299503..299619 | - | 117 | Protein_287 | transposase | - |
GJE06_RS24025 | 299668..299949 | + | 282 | WP_154074344.1 | hypothetical protein | - |
GJE06_RS24030 | 300169..300567 | - | 399 | WP_154074345.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Non-Mobilizable plasmid | - | - | 1..329074 | 329074 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 14146.97 Da Isoelectric Point: 5.5500
>T143101 WP_154074340.1 NZ_CP045959:c296492-296205 [Salmonella enterica subsp. enterica serovar Birkenhead]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFF
Download Length: 288 bp
>T143101 NZ_CP060946:c1140456-1140205 [Escherichia coli O157:H7 str. EC10]
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTTATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGTTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCAAAGGAACAGAAAAGGAC
ATTATTGAGTGA
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTTATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGTTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCAAAGGAACAGAAAAGGAC
ATTATTGAGTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 12380.85 Da Isoelectric Point: 5.5500
>AT143101 WP_154074341.1 NZ_CP045959:c296740-296489 [Salmonella enterica subsp. enterica serovar Birkenhead]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFF
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFF
Download Length: 252 bp
>AT143101 NZ_CP060946:c1140208-1139954 [Escherichia coli O157:H7 str. EC10]
GTGAAACTAATCTGGTCTGAGGAATCATGGGATGATTATCTGTACTGGCAGGAAACAGATAAGCGAATTGTTAAAAAGAT
CAATGAACTTATCAAAGATACCCGCAGAACGCCATTTGAAGGTAAGGGGAAGCCAGAACCCCTGAAACATAATTTGTCAG
GTTTCTGGTCCCGACGCATTACAGAGGAGCACCGTCTGGTATACGCGGTTACCGACGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA
GTGAAACTAATCTGGTCTGAGGAATCATGGGATGATTATCTGTACTGGCAGGAAACAGATAAGCGAATTGTTAAAAAGAT
CAATGAACTTATCAAAGATACCCGCAGAACGCCATTTGAAGGTAAGGGGAAGCCAGAACCCCTGAAACATAATTTGTCAG
GTTTCTGGTCCCGACGCATTACAGAGGAGCACCGTCTGGTATACGCGGTTACCGACGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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