Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4518502..4518640 | Replicon | chromosome |
| Accession | NZ_CP045870 | ||
| Organism | Klebsiella aerogenes strain Y1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4518537..4518640 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4518502..4518640 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GIY00_RS21555 | 4513611..4515671 | + | 2061 | WP_032708611.1 | oligopeptidase B | - |
| GIY00_RS21560 | 4515674..4516333 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| GIY00_RS21565 | 4516413..4516643 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| GIY00_RS21570 | 4516778..4517152 | + | 375 | WP_015366008.1 | CopC domain-containing protein YobA | - |
| GIY00_RS21575 | 4517156..4518025 | + | 870 | WP_032708610.1 | copper homeostasis membrane protein CopD | - |
| GIY00_RS21580 | 4518039..4518380 | + | 342 | WP_015705946.1 | YebY family protein | - |
| - | 4518502..4518640 | - | 139 | - | - | Antitoxin |
| - | 4518537..4518640 | + | 104 | - | - | Toxin |
| GIY00_RS21585 | 4518772..4519851 | - | 1080 | WP_032708609.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| GIY00_RS21590 | 4519826..4520098 | - | 273 | WP_071609883.1 | excisionase | - |
| GIY00_RS21595 | 4520165..4520557 | - | 393 | WP_155953466.1 | hypothetical protein | - |
| GIY00_RS21600 | 4520587..4521051 | - | 465 | WP_196776118.1 | siphovirus Gp157 family protein | - |
| GIY00_RS21605 | 4521087..4523423 | - | 2337 | WP_032708604.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4513611..4536811 | 23200 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T142943 NZ_CP045870:4518537-4518640 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 139 bp
>AT142943 NZ_CP045870:c4518640-4518502 [Klebsiella aerogenes]
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
