Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4487663..4487801 | Replicon | chromosome |
| Accession | NZ_CP045869 | ||
| Organism | Klebsiella aerogenes strain Y3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4487698..4487801 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4487663..4487801 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GIY01_RS21405 | 4482772..4484832 | + | 2061 | WP_032708611.1 | oligopeptidase B | - |
| GIY01_RS21410 | 4484835..4485494 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| GIY01_RS21415 | 4485574..4485804 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| GIY01_RS21420 | 4485939..4486313 | + | 375 | WP_015366008.1 | CopC domain-containing protein YobA | - |
| GIY01_RS21425 | 4486317..4487186 | + | 870 | WP_032708610.1 | copper homeostasis membrane protein CopD | - |
| GIY01_RS21430 | 4487200..4487541 | + | 342 | WP_015705946.1 | YebY family protein | - |
| - | 4487663..4487801 | - | 139 | - | - | Antitoxin |
| - | 4487698..4487801 | + | 104 | - | - | Toxin |
| GIY01_RS21435 | 4487933..4489012 | - | 1080 | WP_032708609.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| GIY01_RS21440 | 4488987..4489259 | - | 273 | WP_071609883.1 | excisionase | - |
| GIY01_RS21445 | 4489326..4489718 | - | 393 | WP_155953466.1 | hypothetical protein | - |
| GIY01_RS21450 | 4489748..4490212 | - | 465 | WP_196776118.1 | siphovirus Gp157 family protein | - |
| GIY01_RS21455 | 4490248..4492584 | - | 2337 | WP_032708604.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4481514..4516200 | 34686 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T142930 NZ_CP045869:4487698-4487801 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 139 bp
>AT142930 NZ_CP045869:c4487801-4487663 [Klebsiella aerogenes]
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
