Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2179752..2180023 | Replicon | chromosome |
| Accession | NZ_CP045863 | ||
| Organism | Escherichia coli O157:H7 strain ATCC 43890 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2179790..2179893 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2179752..2180023 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GIX96_RS10970 | 2176909..2178348 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GIX96_RS10975 | 2178466..2178702 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GIX96_RS10980 | 2178807..2178998 | + | 192 | WP_001296140.1 | YebW family protein | - |
| GIX96_RS10985 | 2178999..2179655 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2179752..2180023 | + | 272 | - | - | Antitoxin |
| - | 2179790..2179893 | - | 104 | - | - | Toxin |
| GIX96_RS10990 | 2180051..2180392 | - | 342 | WP_000976483.1 | YebY family protein | - |
| GIX96_RS10995 | 2180405..2181277 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| GIX96_RS11000 | 2181281..2181655 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| GIX96_RS11005 | 2181794..2182024 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GIX96_RS11010 | 2182126..2182782 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| GIX96_RS11015 | 2182806..2183468 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T142873 NZ_CP045863:c2179893-2179790 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT142873 NZ_CP045863:2179752-2180023 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
