Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) mazF-chpS/PRK09907-MazE
Location 1732384..1732967 Replicon chromosome
Accession NZ_CP045857
Organism Shewanella chilikensis strain DC57

Toxin (Protein)


Gene name mazF Uniprot ID -
Locus tag GII14_RS08025 Protein ID WP_165564826.1
Coordinates 1732638..1732967 (+) Length 110 a.a.

Antitoxin (Protein)


Gene name chpS Uniprot ID -
Locus tag GII14_RS08020 Protein ID WP_165564825.1
Coordinates 1732384..1732638 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 1712400..1804986 92586
- inside IScluster/Tn - - 1722433..1747075 24642


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(3-107)

Antitoxin

SpoVT-AbrB domain

(6-45)


Sequences

Toxin        


Download         Length: 110 a.a.        Molecular weight: 12012.95 Da        Isoelectric Point: 9.6874

>T142856 WP_165564826.1 NZ_CP045857:1732638-1732967 [Shewanella chilikensis]
MSYTPRRGDIVWVDFDPSAGHEQAHHRPALVLSPEPFNKQIQLALVAPITSRVRGHGFEVAVDTDKTKGVVLCQQVKTID
YAARGIKFIEKAPVAVLNEVLAKVRVLVS

Download         Length: 330 bp

>T142856 NZ_CP060885:2730920-2731027 [Escherichia coli]
ATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTATTACCGCAGCGAT
TGTCGGCTGGTGGTGTAACCGGAAGTAA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 8992.24 Da        Isoelectric Point: 4.3189

>AT142856 WP_165564825.1 NZ_CP045857:1732384-1732638 [Shewanella chilikensis]
MQTSIKKWGNSAGAIIPAAVLKKAGFGMGDQVEIEVVQGRIVMSPATPTFTLEELLNVSPKGSFELDSEDNQWLSSSPVG
KEEI

Download         Length: 255 bp

>AT142856 NZ_CP060885:c2730867-2730806 [Escherichia coli]
TGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References