Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1877214..1877352 | Replicon | chromosome |
| Accession | NZ_CP045843 | ||
| Organism | Kluyvera intermedia strain HR2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1877250..1877352 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1877214..1877352 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GHC38_RS08700 | 1873687..1874346 | - | 660 | WP_062776160.1 | exodeoxyribonuclease X | - |
| GHC38_RS08705 | 1874370..1875038 | - | 669 | WP_153742666.1 | carbon-nitrogen hydrolase family protein | - |
| GHC38_RS08710 | 1875127..1875357 | - | 231 | WP_153742667.1 | DNA polymerase III subunit theta | - |
| GHC38_RS08715 | 1875495..1875869 | + | 375 | WP_062776289.1 | CopC domain-containing protein YobA | - |
| GHC38_RS08720 | 1875872..1876741 | + | 870 | WP_153742668.1 | copper homeostasis membrane protein CopD | - |
| GHC38_RS08725 | 1876756..1877094 | + | 339 | WP_153744030.1 | YebY family protein | - |
| - | 1877214..1877352 | - | 139 | - | - | Antitoxin |
| - | 1877250..1877352 | + | 103 | - | - | Toxin |
| GHC38_RS08730 | 1877828..1878763 | + | 936 | WP_062776168.1 | kdo(2)-lipid IV(A) palmitoleoyltransferase | - |
| GHC38_RS08735 | 1878798..1879037 | - | 240 | WP_062776169.1 | DUF1480 family protein | - |
| GHC38_RS08740 | 1879149..1880588 | - | 1440 | WP_153742669.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T142819 NZ_CP045843:1877250-1877352 [Kluyvera intermedia]
GCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 139 bp
>AT142819 NZ_CP045843:c1877352-1877214 [Kluyvera intermedia]
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTCAATCGCCTTGCTTTATAAGAATAGATGACCGTGACAGGTTTTCCAGT
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTCAATCGCCTTGCTTTATAAGAATAGATGACCGTGACAGGTTTTCCAGT
