Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3155209..3155480 | Replicon | chromosome |
| Accession | NZ_CP045827 | ||
| Organism | Escherichia coli strain AUSMDU00014361 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3155247..3155350 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3155209..3155480 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GIJ02_RS16155 | 3152366..3153805 | + | 1440 | WP_000057024.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GIJ02_RS16160 | 3153923..3154159 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GIJ02_RS16165 | 3154264..3154455 | + | 192 | WP_001296140.1 | YebW family protein | - |
| GIJ02_RS16170 | 3154456..3155112 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 3155209..3155480 | + | 272 | - | - | Antitoxin |
| - | 3155247..3155350 | - | 104 | - | - | Toxin |
| GIJ02_RS16175 | 3155508..3155849 | - | 342 | WP_000976492.1 | YebY family protein | - |
| GIJ02_RS16180 | 3155862..3156734 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| GIJ02_RS16185 | 3156738..3157112 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| GIJ02_RS16190 | 3157251..3157481 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GIJ02_RS16195 | 3157583..3158239 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| GIJ02_RS16200 | 3158263..3158925 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T142753 NZ_CP045827:c3155350-3155247 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT142753 NZ_CP045827:3155209-3155480 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
