Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1059051..1059195 | Replicon | chromosome |
| Accession | NZ_CP045783 | ||
| Organism | Klebsiella variicola strain LEMB11 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1059057..1059159 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1059051..1059195 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFC07_RS05100 | 1054574..1056007 | + | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GFC07_RS05105 | 1056123..1056362 | + | 240 | WP_002911393.1 | YebV family protein | - |
| GFC07_RS05110 | 1056460..1056651 | + | 192 | WP_002911395.1 | YebW family protein | - |
| GFC07_RS05115 | 1056648..1057301 | - | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| GFC07_RS05120 | 1057457..1058425 | + | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| GFC07_RS05125 | 1058529..1058672 | + | 144 | WP_046621074.1 | Ecr family regulatory small membrane protein | - |
| - | 1059051..1059195 | + | 145 | - | - | Antitoxin |
| - | 1059057..1059159 | - | 103 | - | - | Toxin |
| GFC07_RS05130 | 1059317..1059655 | - | 339 | WP_008804271.1 | YebY family protein | - |
| GFC07_RS05135 | 1059672..1060541 | - | 870 | WP_100780970.1 | copper homeostasis membrane protein CopD | - |
| GFC07_RS05140 | 1060545..1060919 | - | 375 | WP_038421459.1 | CopC domain-containing protein YobA | - |
| GFC07_RS05145 | 1061033..1061263 | + | 231 | WP_100780971.1 | DNA polymerase III subunit theta | - |
| GFC07_RS05150 | 1061342..1062001 | + | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| GFC07_RS05155 | 1062005..1064065 | - | 2061 | WP_012541258.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T142552 NZ_CP045783:c1059159-1059057 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT142552 NZ_CP045783:1059051-1059195 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
