Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3860331..3860471 | Replicon | chromosome |
| Accession | NZ_CP045771 | ||
| Organism | Citrobacter braakii strain MiY-A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3860333..3860436 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3860331..3860471 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFC06_RS18185 | 3857536..3858582 | + | 1047 | WP_047418276.1 | recombinase RecT | - |
| GFC06_RS18190 | 3858622..3858864 | + | 243 | WP_047415379.1 | DUF4060 family protein | - |
| GFC06_RS18195 | 3858929..3859201 | + | 273 | WP_072034353.1 | excisionase | - |
| GFC06_RS18200 | 3859170..3860255 | + | 1086 | WP_047415377.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 3860331..3860471 | + | 141 | - | - | Antitoxin |
| - | 3860333..3860436 | - | 104 | - | - | Toxin |
| GFC06_RS18205 | 3860592..3860930 | - | 339 | WP_075847181.1 | YebY family protein | - |
| GFC06_RS18210 | 3860951..3861823 | - | 873 | WP_153690476.1 | copper homeostasis membrane protein CopD | - |
| GFC06_RS18215 | 3861827..3862201 | - | 375 | WP_047415373.1 | CopC domain-containing protein YobA | - |
| GFC06_RS18220 | 3862345..3862575 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| GFC06_RS18225 | 3862682..3863338 | + | 657 | WP_016156222.1 | carbon-nitrogen hydrolase family protein | - |
| GFC06_RS18230 | 3863362..3864024 | + | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T142520 NZ_CP045771:c3860436-3860333 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT142520 NZ_CP045771:3860331-3860471 [Citrobacter braakii]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
