Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 675709..675860 | Replicon | chromosome |
| Accession | NZ_CP045769 | ||
| Organism | Enterobacter cancerogenus strain MiY-F | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 675745..675847 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 675709..675860 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GH771_RS03030 | 672192..672854 | - | 663 | WP_088208265.1 | exodeoxyribonuclease X | - |
| GH771_RS03035 | 672878..673528 | - | 651 | WP_088208266.1 | carbon-nitrogen hydrolase family protein | - |
| GH771_RS03040 | 673639..673869 | - | 231 | WP_006176029.1 | DNA polymerase III subunit theta | - |
| GH771_RS03045 | 674007..674378 | + | 372 | WP_153688201.1 | CopC domain-containing protein YobA | - |
| GH771_RS03050 | 674380..675249 | + | 870 | WP_153688202.1 | copper homeostasis membrane protein CopD | - |
| GH771_RS03055 | 675264..675602 | + | 339 | WP_153688203.1 | YebY family protein | - |
| - | 675709..675860 | - | 152 | - | - | Antitoxin |
| - | 675745..675847 | + | 103 | - | - | Toxin |
| GH771_RS03060 | 676011..676952 | - | 942 | WP_058610200.1 | VirK/YbjX family protein | - |
| GH771_RS03065 | 677122..677766 | + | 645 | WP_153688204.1 | protein-serine/threonine phosphatase | - |
| GH771_RS03070 | 677801..678040 | - | 240 | WP_006176013.1 | DUF1480 family protein | - |
| GH771_RS03075 | 678146..679588 | - | 1443 | WP_208789253.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T142501 NZ_CP045769:675745-675847 [Enterobacter cancerogenus]
GCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT142501 NZ_CP045769:c675860-675709 [Enterobacter cancerogenus]
CTTTCTTACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCTTACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
