Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3003684..3003955 | Replicon | chromosome |
| Accession | NZ_CP045741 | ||
| Organism | Escherichia coli strain DH5alpha | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3003814..3003917 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3003684..3003955 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GHR40_RS14280 | 3000239..3000901 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| GHR40_RS14285 | 3000925..3001581 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| GHR40_RS14290 | 3001683..3001913 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GHR40_RS14295 | 3002052..3002426 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| GHR40_RS14300 | 3002430..3003302 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| GHR40_RS14305 | 3003315..3003656 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 3003684..3003955 | - | 272 | - | - | Antitoxin |
| - | 3003814..3003917 | + | 104 | - | - | Toxin |
| GHR40_RS14310 | 3004052..3004708 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| GHR40_RS14315 | 3004709..3004900 | - | 192 | WP_000457842.1 | YebW family protein | - |
| GHR40_RS14320 | 3005005..3005241 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GHR40_RS14325 | 3005359..3006798 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T142448 NZ_CP045741:3003814-3003917 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT142448 NZ_CP045741:c3003955-3003684 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
