Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2113794..2113937 | Replicon | chromosome |
| Accession | NZ_CP045726 | ||
| Organism | Citrobacter freundii strain zone4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2113829..2113932 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2113794..2113937 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GHT30_RS10105 | 2110241..2110903 | - | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| GHT30_RS10110 | 2110927..2111583 | - | 657 | WP_046671220.1 | carbon-nitrogen hydrolase family protein | - |
| GHT30_RS10115 | 2111690..2111920 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| GHT30_RS10120 | 2112064..2112438 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| GHT30_RS10125 | 2112442..2113314 | + | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| GHT30_RS10130 | 2113335..2113673 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 2113794..2113937 | - | 144 | - | - | Antitoxin |
| - | 2113829..2113932 | + | 104 | - | - | Toxin |
| GHT30_RS10135 | 2114086..2114727 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| GHT30_RS10140 | 2114728..2114919 | - | 192 | WP_003034941.1 | YebW family protein | - |
| GHT30_RS10145 | 2115022..2115258 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| GHT30_RS10150 | 2115359..2116747 | - | 1389 | WP_205688464.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrB | 2045067..2129705 | 84638 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T142401 NZ_CP045726:2113829-2113932 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT142401 NZ_CP045726:c2113937-2113794 [Citrobacter freundii]
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
