Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5013982..5014253 | Replicon | chromosome |
| Accession | NZ_CP045712 | ||
| Organism | Escherichia coli strain FHI_NMBU_11 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5014112..5014215 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5013982..5014253 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GHT02_RS24245 | 5010537..5011199 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| GHT02_RS24250 | 5011223..5011879 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| GHT02_RS24255 | 5011981..5012211 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GHT02_RS24260 | 5012350..5012724 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| GHT02_RS24265 | 5012728..5013600 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| GHT02_RS24270 | 5013613..5013954 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 5013982..5014253 | - | 272 | - | - | Antitoxin |
| - | 5014112..5014215 | + | 104 | - | - | Toxin |
| GHT02_RS24275 | 5014350..5015006 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| GHT02_RS24280 | 5015007..5015198 | - | 192 | WP_001296140.1 | YebW family protein | - |
| GHT02_RS24285 | 5015303..5015539 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| GHT02_RS24290 | 5015657..5017096 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4941490..5030091 | 88601 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T142349 NZ_CP045712:5014112-5014215 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT142349 NZ_CP045712:c5014253-5013982 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
