Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1918237..1918382 | Replicon | chromosome |
| Accession | NZ_CP045661 | ||
| Organism | Klebsiella pneumoniae strain SMU18037509 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1918273..1918375 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1918237..1918382 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFJ44_RS09065 | 1913367..1915427 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| GFJ44_RS09070 | 1915431..1916090 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| GFJ44_RS09075 | 1916169..1916399 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| GFJ44_RS09080 | 1916512..1916886 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| GFJ44_RS09085 | 1916890..1917759 | + | 870 | WP_153517860.1 | copper homeostasis membrane protein CopD | - |
| GFJ44_RS09090 | 1917776..1918114 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1918237..1918382 | - | 146 | - | - | Antitoxin |
| - | 1918273..1918375 | + | 103 | - | - | Toxin |
| GFJ44_RS09095 | 1918751..1918894 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| GFJ44_RS09100 | 1918999..1919967 | - | 969 | WP_074185275.1 | DUF535 family protein | - |
| GFJ44_RS09105 | 1920124..1920777 | + | 654 | WP_032447686.1 | protein-serine/threonine phosphatase | - |
| GFJ44_RS09110 | 1920774..1920965 | - | 192 | WP_002911395.1 | YebW family protein | - |
| GFJ44_RS09115 | 1921063..1921302 | - | 240 | WP_002911393.1 | YebV family protein | - |
| GFJ44_RS09120 | 1921418..1922851 | - | 1434 | WP_032447684.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T142260 NZ_CP045661:1918273-1918375 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT142260 NZ_CP045661:c1918382-1918237 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
