Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/-
Location 2349808..2350441 Replicon chromosome
Accession NZ_CP045650
Organism Acinetobacter wanghuae strain dk386

Toxin (Protein)


Gene name cptA Uniprot ID -
Locus tag GFH30_RS11165 Protein ID WP_153372640.1
Coordinates 2349808..2350191 (-) Length 128 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID -
Locus tag GFH30_RS11170 Protein ID WP_153372642.1
Coordinates 2350184..2350441 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GFH30_RS11145 2345228..2347414 - 2187 WP_153372632.1 TRAP transporter large permease subunit -
GFH30_RS11150 2347591..2348166 - 576 WP_153372634.1 rhombosortase -
GFH30_RS11155 2348249..2349280 - 1032 WP_153372636.1 hypothetical protein -
GFH30_RS11160 2349520..2349660 - 141 WP_153372638.1 hypothetical protein -
GFH30_RS11165 2349808..2350191 - 384 WP_153372640.1 hypothetical protein Toxin
GFH30_RS11170 2350184..2350441 - 258 WP_153372642.1 succinate dehydrogenase assembly factor 2 Antitoxin
GFH30_RS11175 2350626..2351798 + 1173 WP_153372644.1 acyl-CoA dehydrogenase family protein -
GFH30_RS11180 2351849..2353339 - 1491 WP_153372646.1 NAD(P)/FAD-dependent oxidoreductase -
GFH30_RS11185 2353557..2353922 - 366 WP_005012953.1 50S ribosomal protein L17 -
GFH30_RS11190 2353941..2354948 - 1008 WP_004650465.1 DNA-directed RNA polymerase subunit alpha -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Flavinator of succinate dehydrogenase

(10-80)


Sequences

Toxin        


Download         Length: 128 a.a.        Molecular weight: 15187.27 Da        Isoelectric Point: 9.9806

>T142256 WP_153372640.1 NZ_CP045650:c2350191-2349808 [Acinetobacter wanghuae]
MDSRCFKLKRSWFALAFQLLIFVLLMFVLYQVLALVLWVVCAVAGLVVYRLFYRKSPQIDQFEHLDGREWSITLQQHTQR
VMVSHVIDHQVYVVVYFQHAKVRPLLIWCDQLPMHQWKALKVLTKLV

Download         Length: 384 bp

>T142256 NZ_CP060513:14789-15121 [Salmonella enterica]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 10365.83 Da        Isoelectric Point: 4.4558

>AT142256 WP_153372642.1 NZ_CP045650:c2350441-2350184 [Acinetobacter wanghuae]
MTDDISLEERKVIYRARRGLKELDVYFDPYVRNYYLSAEPFERQMFAELIEQEDPDLLDWFMEVSEPPRPELKAFIQKLK
FYVHG

Download         Length: 258 bp

>AT142256 NZ_CP060513:14531-14788 [Salmonella enterica]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References