Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) phd-doc/Doc-RelB
Location 14600..15201 Replicon chromosome
Accession NZ_CP045538
Organism Proteus mirabilis strain CRE14IB

Toxin (Protein)


Gene name doc Uniprot ID A0A2X2BIG8
Locus tag GD587_RS00065 Protein ID WP_004246497.1
Coordinates 14600..14983 (-) Length 128 a.a.

Antitoxin (Protein)


Gene name phd Uniprot ID A0A1Z1SPN9
Locus tag GD587_RS00070 Protein ID WP_004246496.1
Coordinates 14980..15201 (-) Length 74 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GD587_RS00040 9973..10431 + 459 WP_004249766.1 GNAT family N-acetyltransferase -
GD587_RS00045 10527..11264 - 738 WP_004249950.1 sel1 repeat family protein -
GD587_RS00050 11373..12272 + 900 WP_112843219.1 N-acetylmuramic acid 6-phosphate etherase -
GD587_RS00055 12629..13867 - 1239 WP_020946511.1 HipA domain-containing protein -
GD587_RS00060 13880..14194 - 315 WP_004246498.1 helix-turn-helix domain-containing protein -
GD587_RS00065 14600..14983 - 384 WP_004246497.1 type II toxin-antitoxin system death-on-curing family toxin Toxin
GD587_RS00070 14980..15201 - 222 WP_004246496.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
GD587_RS00075 15482..16345 - 864 WP_004249947.1 YicC family protein -
GD587_RS00080 16472..17188 + 717 WP_004249760.1 ribonuclease PH -
GD587_RS00085 17270..17914 + 645 WP_004246493.1 orotate phosphoribosyltransferase -
GD587_RS00090 18233..18838 - 606 WP_004246491.1 nucleoid occlusion factor SlmA -
GD587_RS00095 18958..19416 - 459 WP_152964400.1 dUTP diphosphatase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Death on curing protein

(5-115)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-52)


Sequences

Toxin        


Download         Length: 128 a.a.        Molecular weight: 14471.53 Da        Isoelectric Point: 8.5125

>T142103 WP_004246497.1 NZ_CP045538:c14983-14600 [Proteus mirabilis]
MIWVSAQEVIAFHDRILQRFPGVAGMSDPGRAEALIYRVQNRKHYEGITDVFELAATYWVAIARGHIFNDGNKRTAFFVT
MTFLYRNGIRIRDTGNMLENLTVEAATGEKTVDQLAKHLQNLVEKTN

Download         Length: 384 bp

>T142103 NZ_CP060397:c2912447-2912019 [Synechococcus sp. CBW1004]
ATGATCGTCGTCGACGCCAACCTGCTGGTCTATGCGCTGCACGCCGACATGCCCAAGCACGCAGCGGCAAGGTCATGGCT
TGAGCAGTGCCTGTCTGGCGAGGAACCCCTGGCTCTGTGTTGGGTGGTGATCCTTGCCGTGATGCGGATCTGCACCAATG
CCCGGCTGTTCCCCAACGCGCTGACCGCACATCAGGCGATCGAGGTAGCGCAGGCCTGGCTCGATCACCCCACCGTGCTG
CTGCTGGAGCCCGGACCGCGGCACTGGGAGATCCTCTCCGAGGTTCTGGACCAGGCCGGAACCGCCGGCAATCTGACCAT
GGATGCCCACCTGGCCGCCCTGGCCCTCGAGCACGGCGGCTCGGTCCATAGCTGTGACGCCGACTTTCGCCGCTTCCCGG
GCCTGCGGTTGATCAACCCGCTCGTCTGA

Antitoxin


Download         Length: 74 a.a.        Molecular weight: 8260.23 Da        Isoelectric Point: 5.5667

>AT142103 WP_004246496.1 NZ_CP045538:c15201-14980 [Proteus mirabilis]
MRTYTSTQARANISEVLDIATHGEPVEITRRDGCSAVVISKTEFESYQNAKLDAEFDMMMQRHGHTVEALTNR

Download         Length: 222 bp

>AT142103 NZ_CP060397:c2912710-2912444 [Synechococcus sp. CBW1004]
ATGCGCACCACCCTGACCATCGACGACGGCCTGCTGCGCCAGCTGCGCCAGAAAGCCCTCGACAGCGGCAAGACGTTCAA
GCAGGTGGTGAACGAGACCCTACGGGCCGGACTGCAGCAACCTGTGGAGGCCGCGCGGCACCGCTATGTGTGCCCCACCT
TCTCCATGGGCCAGCCCCAGTGGCCTGTCGATCTCGATAAAGCGCTCACCTTGGCGGCCGAACTGGAGGACCAGGAGATC
GTGACCCAGTTGATGCAGGGCCAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2X2BIG8

Antitoxin

Source ID Structure
AlphaFold DB A0A1Z1SPN9

References