Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 479432..480069 Replicon chromosome
Accession NZ_CP045529
Organism Luteimicrobium xylanilyticum strain HY-24

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag KDY119_RS02120 Protein ID WP_036955012.1
Coordinates 479671..480069 (+) Length 133 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag KDY119_RS02115 Protein ID WP_148284329.1
Coordinates 479432..479659 (+) Length 76 a.a.

Genomic Context

KDY119_RS02095KDY119_RS02100KDY119_RS02110KDY119_RS02115KDY119_RS02120KDY119_RS02125KDY119_RS02130KDY119_RS02090KDY119_RS02105
Location: 476007..476903 (897 bp)
Type: Others
Protein ID: WP_153022652.1
Location: 476914..477699 (786 bp)
Type: Others
Protein ID: WP_036954623.1
Location: 478553..479350 (798 bp)
Type: Others
Protein ID: WP_036954626.1
Location: 479432..479659 (228 bp)
Type: Antitoxin
Protein ID: WP_148284329.1
Location: 479671..480069 (399 bp)
Type: Toxin
Protein ID: WP_036955012.1
Location: 480178..481497 (1320 bp)
Type: Others
Protein ID: WP_153021860.1
Location: 481694..482779 (1086 bp)
Type: Others
Protein ID: WP_153021861.1
Location: 474810..475841 (1032 bp)
Type: Others
Protein ID: WP_083891215.1
Location: 477712..478467 (756 bp)
Type: Others
Protein ID: WP_153021859.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
KDY119_RS02090474810..475841-1032WP_083891215.1ABC transporter ATP-binding protein-
KDY119_RS02095476007..476903+897WP_153022652.1alpha/beta hydrolase-
KDY119_RS02100476914..477699+786WP_036954623.1TSUP family transporter-
KDY119_RS02105477712..478467-756WP_153021859.1helix-turn-helix transcriptional regulator-
KDY119_RS02110478553..479350+798WP_036954626.1sulfite exporter TauE/SafE family protein-
KDY119_RS02115479432..479659+228WP_148284329.1antitoxinAntitoxin
KDY119_RS02120479671..480069+399WP_036955012.1PIN domain-containing proteinToxin
KDY119_RS02125480178..481497+1320WP_153021860.1aspartate kinase-
KDY119_RS02130481694..482779+1086WP_153021861.1aspartate-semialdehyde dehydrogenase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(3-123)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 133 a.a.        Molecular weight: 13889.73 Da        Isoelectric Point: 4.8675

>T142099 WP_036955012.1 NZ_CP045529:479671-480069 [Luteimicrobium xylanilyticum]
MFVLDTDVVIDVLRSRSPLMLERFSEHGDALTVSAVTVAELHFGAARSSAPSSNRAAVEEFLAFLEVLPFDAAAAAHAGE
IRGALTAAGTPIGGYDVLIAGHARSVAAVLVTGNVREFSRVDGLRVVDWGDR

Download         Length: 399 bp

>T142099 NZ_CP060397:c2303242-2302967 [Synechococcus sp. CBW1004]
ATGCAGGTTGTGAGTTTCTCCGAGGCTCGCGAGAGCTTCAAAACCGTTCTGGATCGCGTCGTCGCCGACGCCGATGTCAC
GTTGATCACCAGACGCCACGCCAAGGACGCGGTTGTGATGTCCCTCGACACTTATAACAGCCTGATGGAGACCGTGCATC
TGCTGCGTTCTCCCGCCAACGCAGCTCATCTGCAGCGCTCCCTGGAGCAGGCCGAACACGGTGAACTGCTGGAGCAGCCT
CTGTGGGAACCGGATCGCGCTGATGCCAACTGCTGA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8699.78 Da        Isoelectric Point: 6.2166

>AT142099 WP_148284329.1 NZ_CP045529:479432-479659 [Luteimicrobium xylanilyticum]
VTTTVFHSNRTQAVRLPKDVALPDDVREVEIVAVGDARVIVPARRRWEFWFAHGLEVSTDFMSHRDQPEAQERAW

Download         Length: 228 bp

>AT142099 NZ_CP060397:c2302980-2302711 [Synechococcus sp. CBW1004]
ATGCCAACTGCTGAGCGCCTGGCCTGGACTCCGGCAGCCTGGGAGGATTACTTGTACTGGCAGGGTCAGGATCGCAAACA
GTTGCGTCGGATGTACCAGCTGATCCAGGCCTGCCTGCGGGAACCCTTCACAGGCATCGGCAAACCGGAGCCATTGCGTG
AAAATCTCTCCGGCTGCTGGTCCCGCCGGATTGATGACGAACACCGGCTTGTCTATCGCCTGGAAGCCTCACTGTTGGTG
ATCCTGGCCTGTCGCTACCACTACCGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References