Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yoeB-relB/YoeB-RelB |
Location | 5767749..5768284 | Replicon | chromosome |
Accession | NZ_CP045503 | ||
Organism | Shewanella sp. YLB-08 |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | - |
Locus tag | FM038_RS25110 | Protein ID | WP_142873266.1 |
Coordinates | 5767749..5768033 (-) | Length | 95 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | FM038_RS25115 | Protein ID | WP_142873265.1 |
Coordinates | 5768033..5768284 (-) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
FM038_RS25090 | 5763577..5764548 | + | 972 | WP_142873269.1 | nucleoside hydrolase | - |
FM038_RS25095 | 5764682..5765323 | - | 642 | WP_185965814.1 | LysE family translocator | - |
FM038_RS25100 | 5766219..5766419 | + | 201 | WP_142873268.1 | hypothetical protein | - |
FM038_RS25105 | 5766809..5767738 | + | 930 | WP_142873267.1 | DUF1186 domain-containing protein | - |
FM038_RS25110 | 5767749..5768033 | - | 285 | WP_142873266.1 | Txe/YoeB family addiction module toxin | Toxin |
FM038_RS25115 | 5768033..5768284 | - | 252 | WP_142873265.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
FM038_RS25120 | 5768659..5768826 | - | 168 | WP_185965803.1 | hypothetical protein | - |
FM038_RS25125 | 5769031..5769783 | + | 753 | WP_185965802.1 | TdeIII family type II restriction endonuclease | - |
FM038_RS25130 | 5769811..5771208 | - | 1398 | WP_142873263.1 | DNA cytosine methyltransferase | - |
FM038_RS25135 | 5771350..5771724 | + | 375 | WP_142873262.1 | hypothetical protein | - |
FM038_RS25140 | 5771726..5771893 | + | 168 | WP_185965817.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 a.a. Molecular weight: 11300.78 Da Isoelectric Point: 9.7953
>T141993 WP_142873266.1 NZ_CP045503:c5768033-5767749 [Shewanella eurypsychrophilus]
MKTNTTTLFSTFYSDQAWNDYLYWQQQDKKTLKRINLLIKDCQRTPFEGIGKPERLKENLSGYWSRRITDEHSLVYKATQ
DRLTIVAVRYHYSS
MKTNTTTLFSTFYSDQAWNDYLYWQQQDKKTLKRINLLIKDCQRTPFEGIGKPERLKENLSGYWSRRITDEHSLVYKATQ
DRLTIVAVRYHYSS
Download Length: 285 bp
>T141993 NZ_CP060276:4531028-4531339 [Serratia ureilytica]
ATGCATATCATTTCCAGGGAACCGTTCAATAACGCAACGAAGCAATATCCCAATGAAGCCACTGCTCTCGAGGCCATTTA
TAAAGCGTTGCGACGGGGTGAGTTCCGCACGCCGGACGAGTTAAAAGCGCTTTTTCCTTCGCTCGATCGTATGAAGTACA
AAGAGAAATGGTGGGTCATTGACGTCGGCGGCAACCACCTGCGGATCTTGTTCTTTGCCAGCTTCGAGACACAGAAAGTC
TTCATAAAGCATATCGTTAGCCACGCCGAATACGACAAGCTGATGCAGCACTATCGAAGGAGTTCGTCATGA
ATGCATATCATTTCCAGGGAACCGTTCAATAACGCAACGAAGCAATATCCCAATGAAGCCACTGCTCTCGAGGCCATTTA
TAAAGCGTTGCGACGGGGTGAGTTCCGCACGCCGGACGAGTTAAAAGCGCTTTTTCCTTCGCTCGATCGTATGAAGTACA
AAGAGAAATGGTGGGTCATTGACGTCGGCGGCAACCACCTGCGGATCTTGTTCTTTGCCAGCTTCGAGACACAGAAAGTC
TTCATAAAGCATATCGTTAGCCACGCCGAATACGACAAGCTGATGCAGCACTATCGAAGGAGTTCGTCATGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9447.56 Da Isoelectric Point: 4.4341
>AT141993 WP_142873265.1 NZ_CP045503:c5768284-5768033 [Shewanella eurypsychrophilus]
MSVYSFTEVRSNLKSVCDSVVNDCEPAVIHRRGAENVVMFSESEFNSWKETIYLLSNPVNAKHLLDSIKQIDDGQAQERE
LLD
MSVYSFTEVRSNLKSVCDSVVNDCEPAVIHRRGAENVVMFSESEFNSWKETIYLLSNPVNAKHLLDSIKQIDDGQAQERE
LLD
Download Length: 252 bp
>AT141993 NZ_CP060276:4531336-4531758 [Serratia ureilytica]
ATGATTACAGATGCCATTAAGGCGGCCGATGCGCTACTGCGCGCCGTACCCTTATTGCAGGGCAGCCACGCTCAGCAAGA
CTACCGAGACGCGCTCGAATTGGTGGAATATCTGCTGGAAAACGATGAACGCCATCCGCTGATTGACCTGTTGGCAAAAA
AAATCGCCGAATATGAAGACAACAGCGCCGAATTTACCGCATTCAACCAGCGTATCGCCCAACTCCCGCAGGGGGTGGCC
GCGCTTCGCGTATTGATGGAACAGCACCAACTCAGCCAAAGTGATTTTGAACATGAGATCGGCAAAAAGTCGTTGGTTAA
CCAAATCCTGAACGGCAAAAGATCGCTGACCATTCCGCACATTATGGCGCTGGCCAAACGCTTCAATCTGCCCCCAGCCC
TGTTCCTGCCGGAAGCGGATTAA
ATGATTACAGATGCCATTAAGGCGGCCGATGCGCTACTGCGCGCCGTACCCTTATTGCAGGGCAGCCACGCTCAGCAAGA
CTACCGAGACGCGCTCGAATTGGTGGAATATCTGCTGGAAAACGATGAACGCCATCCGCTGATTGACCTGTTGGCAAAAA
AAATCGCCGAATATGAAGACAACAGCGCCGAATTTACCGCATTCAACCAGCGTATCGCCCAACTCCCGCAGGGGGTGGCC
GCGCTTCGCGTATTGATGGAACAGCACCAACTCAGCCAAAGTGATTTTGAACATGAGATCGGCAAAAAGTCGTTGGTTAA
CCAAATCCTGAACGGCAAAAGATCGCTGACCATTCCGCACATTATGGCGCTGGCCAAACGCTTCAATCTGCCCCCAGCCC
TGTTCCTGCCGGAAGCGGATTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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