Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yoeB-relB/YoeB-RelB
Location 5767749..5768284 Replicon chromosome
Accession NZ_CP045503
Organism Shewanella sp. YLB-08

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag FM038_RS25110 Protein ID WP_142873266.1
Coordinates 5767749..5768033 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag FM038_RS25115 Protein ID WP_142873265.1
Coordinates 5768033..5768284 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FM038_RS25090 5763577..5764548 + 972 WP_142873269.1 nucleoside hydrolase -
FM038_RS25095 5764682..5765323 - 642 WP_185965814.1 LysE family translocator -
FM038_RS25100 5766219..5766419 + 201 WP_142873268.1 hypothetical protein -
FM038_RS25105 5766809..5767738 + 930 WP_142873267.1 DUF1186 domain-containing protein -
FM038_RS25110 5767749..5768033 - 285 WP_142873266.1 Txe/YoeB family addiction module toxin Toxin
FM038_RS25115 5768033..5768284 - 252 WP_142873265.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
FM038_RS25120 5768659..5768826 - 168 WP_185965803.1 hypothetical protein -
FM038_RS25125 5769031..5769783 + 753 WP_185965802.1 TdeIII family type II restriction endonuclease -
FM038_RS25130 5769811..5771208 - 1398 WP_142873263.1 DNA cytosine methyltransferase -
FM038_RS25135 5771350..5771724 + 375 WP_142873262.1 hypothetical protein -
FM038_RS25140 5771726..5771893 + 168 WP_185965817.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(13-92)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-72)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 11300.78 Da        Isoelectric Point: 9.7953

>T141993 WP_142873266.1 NZ_CP045503:c5768033-5767749 [Shewanella eurypsychrophilus]
MKTNTTTLFSTFYSDQAWNDYLYWQQQDKKTLKRINLLIKDCQRTPFEGIGKPERLKENLSGYWSRRITDEHSLVYKATQ
DRLTIVAVRYHYSS

Download         Length: 285 bp

>T141993 NZ_CP060276:4531028-4531339 [Serratia ureilytica]
ATGCATATCATTTCCAGGGAACCGTTCAATAACGCAACGAAGCAATATCCCAATGAAGCCACTGCTCTCGAGGCCATTTA
TAAAGCGTTGCGACGGGGTGAGTTCCGCACGCCGGACGAGTTAAAAGCGCTTTTTCCTTCGCTCGATCGTATGAAGTACA
AAGAGAAATGGTGGGTCATTGACGTCGGCGGCAACCACCTGCGGATCTTGTTCTTTGCCAGCTTCGAGACACAGAAAGTC
TTCATAAAGCATATCGTTAGCCACGCCGAATACGACAAGCTGATGCAGCACTATCGAAGGAGTTCGTCATGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9447.56 Da        Isoelectric Point: 4.4341

>AT141993 WP_142873265.1 NZ_CP045503:c5768284-5768033 [Shewanella eurypsychrophilus]
MSVYSFTEVRSNLKSVCDSVVNDCEPAVIHRRGAENVVMFSESEFNSWKETIYLLSNPVNAKHLLDSIKQIDDGQAQERE
LLD

Download         Length: 252 bp

>AT141993 NZ_CP060276:4531336-4531758 [Serratia ureilytica]
ATGATTACAGATGCCATTAAGGCGGCCGATGCGCTACTGCGCGCCGTACCCTTATTGCAGGGCAGCCACGCTCAGCAAGA
CTACCGAGACGCGCTCGAATTGGTGGAATATCTGCTGGAAAACGATGAACGCCATCCGCTGATTGACCTGTTGGCAAAAA
AAATCGCCGAATATGAAGACAACAGCGCCGAATTTACCGCATTCAACCAGCGTATCGCCCAACTCCCGCAGGGGGTGGCC
GCGCTTCGCGTATTGATGGAACAGCACCAACTCAGCCAAAGTGATTTTGAACATGAGATCGGCAAAAAGTCGTTGGTTAA
CCAAATCCTGAACGGCAAAAGATCGCTGACCATTCCGCACATTATGGCGCTGGCCAAACGCTTCAATCTGCCCCCAGCCC
TGTTCCTGCCGGAAGCGGATTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References