Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VII | Classification (family/domain) | HepT-MntA/HepT(toxin) |
Location | 3625801..3626667 | Replicon | chromosome |
Accession | NZ_CP045503 | ||
Organism | Shewanella sp. YLB-08 |
Toxin (Protein)
Gene name | hepT | Uniprot ID | - |
Locus tag | FM038_RS15405 | Protein ID | WP_142874274.1 |
Coordinates | 3626266..3626667 (+) | Length | 134 a.a. |
Antitoxin (Protein)
Gene name | mntA | Uniprot ID | - |
Locus tag | FM038_RS15400 | Protein ID | WP_142874273.1 |
Coordinates | 3625801..3626199 (+) | Length | 133 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
FM038_RS15385 | 3622029..3623435 | - | 1407 | WP_142874270.1 | sulfate adenylyltransferase subunit CysN | - |
FM038_RS15390 | 3623517..3623870 | - | 354 | WP_142874271.1 | four helix bundle protein | - |
FM038_RS15395 | 3624058..3624963 | - | 906 | WP_142874272.1 | sulfate adenylyltransferase subunit CysD | - |
FM038_RS15400 | 3625801..3626199 | + | 399 | WP_142874273.1 | nucleotidyltransferase domain-containing protein | Antitoxin |
FM038_RS15405 | 3626266..3626667 | + | 402 | WP_142874274.1 | DUF86 domain-containing protein | Toxin |
FM038_RS15410 | 3627173..3627730 | - | 558 | WP_142874275.1 | hypothetical protein | - |
FM038_RS15415 | 3627896..3628228 | - | 333 | Protein_2984 | UTP--glucose-1-phosphate uridylyltransferase | - |
FM038_RS15420 | 3628268..3628468 | + | 201 | WP_142874276.1 | nucleotidyltransferase domain-containing protein | - |
FM038_RS15425 | 3628666..3629736 | + | 1071 | WP_142874277.1 | dTDP-glucose 4,6-dehydratase | - |
FM038_RS15430 | 3629733..3630608 | + | 876 | WP_142874278.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
FM038_RS15435 | 3630688..3631575 | - | 888 | WP_142874279.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 134 a.a. Molecular weight: 15110.32 Da Isoelectric Point: 6.7496
>T141992 WP_142874274.1 NZ_CP045503:3626266-3626667 [Shewanella eurypsychrophilus]
MNDITINKLTTIRRCLTRIKDVYGDGSSFPHDYTLQDSVLLNLQRACEASIDIANHISRQHKFGVPQSSRDSFTLLAQND
VIPVALADKLKKMVGLRNIAVHDYQELNLDIVIHVIKHNLKDFEDFIDAIQPV
MNDITINKLTTIRRCLTRIKDVYGDGSSFPHDYTLQDSVLLNLQRACEASIDIANHISRQHKFGVPQSSRDSFTLLAQND
VIPVALADKLKKMVGLRNIAVHDYQELNLDIVIHVIKHNLKDFEDFIDAIQPV
Download Length: 402 bp
>T141992 NZ_CP060276:4467772-4468062 [Serratia ureilytica]
ATGATTAAATCTTTCCGCGATCGCTATCTGGAGCAGTTCTATCTGGAAGGCAGGCGCAGCCGTCTTATCCCCGGCGCGCT
CGAGCGGCAGTTGGCCAGAAAGCTCGATATGTTAGCCGCCGCGCAGCAAGAGCGTGATTTGCATCACCCCACGGGTAACT
ATTACAAGCGGCTATCCGGGCCATTTCAGGGATGGTCGAGTCTGCGCGTCAATATGCACTGGCGGCTGATGTTCCAGTGG
CGGCATGATGCCGCCGAAAAAATTTACCTCGATCCTCACCAAGATACCTGA
ATGATTAAATCTTTCCGCGATCGCTATCTGGAGCAGTTCTATCTGGAAGGCAGGCGCAGCCGTCTTATCCCCGGCGCGCT
CGAGCGGCAGTTGGCCAGAAAGCTCGATATGTTAGCCGCCGCGCAGCAAGAGCGTGATTTGCATCACCCCACGGGTAACT
ATTACAAGCGGCTATCCGGGCCATTTCAGGGATGGTCGAGTCTGCGCGTCAATATGCACTGGCGGCTGATGTTCCAGTGG
CGGCATGATGCCGCCGAAAAAATTTACCTCGATCCTCACCAAGATACCTGA
Antitoxin
Download Length: 133 a.a. Molecular weight: 14926.91 Da Isoelectric Point: 4.3168
>AT141992 WP_142874273.1 NZ_CP045503:3625801-3626199 [Shewanella eurypsychrophilus]
MFQLDKAVLINAVRSKLPNLKLIYLFGSYASGEQHPESDLDIAILPNKALDNITRWDIAQELASEFDVDVDLIDLNCAST
VLCQQVITQGICLWGNTHDDDIFTTKTMSMYQHLQAERAEILSDFKSINHNQ
MFQLDKAVLINAVRSKLPNLKLIYLFGSYASGEQHPESDLDIAILPNKALDNITRWDIAQELASEFDVDVDLIDLNCAST
VLCQQVITQGICLWGNTHDDDIFTTKTMSMYQHLQAERAEILSDFKSINHNQ
Download Length: 399 bp
>AT141992 NZ_CP060276:4468077-4468400 [Serratia ureilytica]
ATGTTGGAAACCACGACTCGCGAACCCACCACGGTGGGAGAAGTGCTGCAGGAAGAATATTTAACGCCGTTAGGCATCGG
CCAAGAAGAACTGGCAAAGGTATTGGGCGTCACCCGCGCCACCGTCAATCGCCTGTGCAACGGGCATCGACGCATGAGCG
TTGCCGAGGCCAATCTGTTTGCCGATCTGTTCGAAACGACCGCCGACTTTTGGCTAAACCTGCAGGCGGCACACGATCGC
TGGGAAGCCAGACAGGCCGATGCGCAGCGTGTGCGGCTGCGGCCAATCAAAGAAATACTGGGACGCAATATCACTCATGC
ATGA
ATGTTGGAAACCACGACTCGCGAACCCACCACGGTGGGAGAAGTGCTGCAGGAAGAATATTTAACGCCGTTAGGCATCGG
CCAAGAAGAACTGGCAAAGGTATTGGGCGTCACCCGCGCCACCGTCAATCGCCTGTGCAACGGGCATCGACGCATGAGCG
TTGCCGAGGCCAATCTGTTTGCCGATCTGTTCGAAACGACCGCCGACTTTTGGCTAAACCTGCAGGCGGCACACGATCGC
TGGGAAGCCAGACAGGCCGATGCGCAGCGTGTGCGGCTGCGGCCAATCAAAGAAATACTGGGACGCAATATCACTCATGC
ATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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