141991

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 1710909..1711437 Replicon chromosome
Accession NZ_CP045503
Organism Shewanella sp. YLB-08

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag FM038_RS07190 Protein ID WP_142872614.1
Coordinates 1710909..1711199 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag FM038_RS07195 Protein ID WP_142872615.1
Coordinates 1711189..1711437 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FM038_RS07170 1706480..1708456 + 1977 WP_142872610.1 BCCT family transporter -
FM038_RS07175 1709125..1709361 + 237 WP_142872611.1 hypothetical protein -
FM038_RS07180 1709586..1710284 + 699 WP_142872612.1 hypothetical protein -
FM038_RS07185 1710303..1710785 + 483 WP_142872613.1 GNAT family N-acetyltransferase -
FM038_RS07190 1710909..1711199 - 291 WP_142872614.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
FM038_RS07195 1711189..1711437 - 249 WP_142872615.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
FM038_RS07200 1711514..1711620 - 107 Protein_1404 IS110 family transposase -
FM038_RS07205 1712222..1712572 + 351 WP_142872616.1 YajD family HNH nuclease -
FM038_RS07210 1712655..1712894 - 240 WP_142872617.1 DUF1289 domain-containing protein -
FM038_RS07215 1713204..1714370 + 1167 WP_142872618.1 chemotaxis protein -
FM038_RS07220 1714609..1715853 + 1245 WP_142872968.1 methyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-84)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11228.18 Da        Isoelectric Point: 10.6309

>T141991 WP_142872614.1 NZ_CP045503:c1711199-1710909 [Shewanella eurypsychrophilus]
MTYNLEFKKSALKEWKKLGSTLQQQFKKKLSERLDNPHVPAAKLLGGDNMYKIKLRQSGYRLVYKVQDNIVIVTVLAVGK
RERNDVYQKAMKRLDD

Download         Length: 291 bp

>T141991 NZ_CP060276:c4095454-4095032 [Serratia ureilytica]
GTGGCCCAGTGGCGATGTGATATCCGCATTTCCTGGCGCACCCAGCTGTTCTCTCTGTTGACCCACGGCGTCCTGATCCT
GCTGATCCTGATTTCGCCCTGGCCGGAAGGCTTTGGTCCGCTCTGGCTGGTGTTGCTGACGCTGGTGGTGTTTCAGTGCA
TTCGCAGCCAGAAGCGCATCGCTGCGGTGCAGGGTGAACTGCGGCTGCTGGCGGACAGGCGTTTCAGCTGGCACGGCCGA
GAATGGCGGCTGGCGAAAAAGCCCTGGATGCCGGGCTACGGCCTGCTGCTGACGCTACAGCCTATGGAGGGCAAAAAGCG
CCGTCGGCTGTGGCTGGCTTCCGACTGCATGAGCAAAGAGGAGTGGCGCCACCTGCGGCAGCTGTTGCTGTATCCGCCGG
CGGGTGACGGCGAACAAGACTGA

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9070.36 Da        Isoelectric Point: 4.0206

>AT141991 WP_142872615.1 NZ_CP045503:c1711437-1711189 [Shewanella eurypsychrophilus]
MTSRILADVAASITEFKANPMKVATSAYGEPVAVLNRNEPAFYCVPAEAYEMMMDKLEDLELLTIAKEREGEESISVNLN
DL

Download         Length: 249 bp

>AT141991 NZ_CP060276:c4095701-4095435 [Serratia ureilytica]
ATGGATATTAACAACAAAGCACGTATTCACTGGGCTTGCCGTCGTGGCATGCGCGAGCTGGACATCTCCATCATGCCGTT
CTTCGAATACGAATACGACAGCCTGAATGACGCGGACAAGGCGCTGTTCATCCGTCTGCTCGAGTGCGACGATCCCGATT
TGTTCAACTGGCTGATGAATCATGGCGCGCCGCAGGACAGCGAGCTGCAAAGAATGGTGACCCTGATCCAAACGCGAAAT
AAAGATCGTGGCCCAGTGGCGATGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References