Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3006114..3006257 | Replicon | chromosome |
| Accession | NZ_CP045487 | ||
| Organism | Enterobacter cloacae strain 14240244101 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3006119..3006222 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3006114..3006257 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GEA60_RS14220 | 3001586..3001825 | + | 240 | WP_046888041.1 | YebV family protein | - |
| GEA60_RS14225 | 3001859..3002503 | - | 645 | WP_182381874.1 | protein-serine/threonine phosphatase | - |
| GEA60_RS14230 | 3002671..3003612 | + | 942 | WP_163280406.1 | VirK/YbjX family protein | - |
| GEA60_RS14235 | 3004204..3005043 | + | 840 | WP_203461319.1 | benzoate transporter | - |
| - | 3006114..3006257 | + | 144 | - | - | Antitoxin |
| - | 3006119..3006222 | - | 104 | - | - | Toxin |
| GEA60_RS14240 | 3006362..3006700 | - | 339 | WP_014832387.1 | YebY family protein | - |
| GEA60_RS14245 | 3006717..3007586 | - | 870 | WP_063426239.1 | copper homeostasis membrane protein CopD | - |
| GEA60_RS14250 | 3007588..3007959 | - | 372 | WP_046888036.1 | CopC domain-containing protein YobA | - |
| GEA60_RS14255 | 3008097..3008327 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| GEA60_RS14260 | 3008437..3009087 | + | 651 | WP_203461320.1 | carbon-nitrogen hydrolase family protein | - |
| GEA60_RS14265 | 3009111..3009773 | + | 663 | WP_013096100.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T141966 NZ_CP045487:c3006222-3006119 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT141966 NZ_CP045487:3006114-3006257 [Enterobacter cloacae]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
